Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00017 ATGGCCGCCATAGCCAATGTGCTCTGCTTTTCGTTCATTATATCATTAACTTGGATGGTTGAAGCTCGAATCCCAGGGGTTTACTCTGGGGGTTCTTGGCAAACTGCTCATGCTACCTTTTACGGAGGAGCTGATGCTTCCGGCACCATGGTTGGTGTTTCAGGGGGAGCGTGTGGGTACGGAAACCTGTACAGCCAAGGGTACGGTGTGAACACAGCGGCATTGAGCACAGCACTTTTCAACAATGGCTTAAGCTGCGGTGCGTGTTTTGAGATCAAGTGCGCAAACGACGGGGAATGGTGTCACTCTGGGAGTCCATCCATCTTTATCACCGCAACTAACTTCTGTCCTCCTAACTATGCTCTTCCAAACGACAATGGTGGATGGTGCAACCCTCCACGCCCACACTTCGACCTTGCCATGCCTATGTTCCTCAAAATTGCCGAGTACCGTGCCGGCATCGTCCCTGTCGCCTATCGACGGTTGCCATGCAGAAAGCAGGGTGGGATACGGTTCACAATAAACGGTTTCCGTTTCTTCAACTTGGTTCTGATCAGCAACGTCGCGGGTGCAGGGGATATCGTGCGCACGTACGTGAAGGGCTCTCGGACCGAGTGGATGCCGTTGAGCCGAAACTGGGGTCAGAACTGGCAGTCGAACGCTGTTTTGGTGGGCCAGGCCCTGTCCTTCCGTGTCACGGCCAGCGACCGCCGCACCTCCACCTCTTGGAACATTGCTCCGGCCAGTTGGCAATTCGGTCAAACTTTCACCGGGAAGAATTTTCGGGTCTAA 792 0.5404 MAAIANVLCFSFIISLTWMVEARIPGVYSGGSWQTAHATFYGGADASGTMVGVSGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDGEWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRLPCRKQGGIRFTINGFRFFNLVLISNVAGAGDIVRTYVKGSRTEWMPLSRNWGQNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPASWQFGQTFTGKNFRV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00017 263 CDD DPBB_EXPA_N 33 164 - -
Gabi1232g00017 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Gabi1232g00017 263 SUPERFAMILY Barwin-like endoglucanases 32 187 IPR036908 -
Gabi1232g00017 263 Gene3D - 21 165 IPR036908 -
Gabi1232g00017 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Gabi1232g00017 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 169 IPR007112 -
Gabi1232g00017 263 SMART dpbb_1 72 159 IPR007112 -
Gabi1232g00017 263 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Gabi1232g00017 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Gabi1232g00017 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Gabi1232g00017 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Gabi1232g00017 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Gabi1232g00017 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Gabi1232g00017 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Gabi1232g00017 263 FunFam Expansin 22 165 - -
Gabi1232g00017 263 FunFam Expansin 169 261 - -
Gabi1232g00017 263 PANTHER EXPANSIN-A15 17 261 IPR002963 GO:0009664
Gabi1232g00017 263 Pfam Lytic transglycolase 72 159 IPR009009 -
Gabi1232g00017 263 Gene3D - 169 261 IPR036749 -
Gabi1232g00017 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00017 Gabi-Chr1232 135003 136763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00017 1 263 Expansin Gene Family AT2G39700 80.228 1.02e-157 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00017 - - gmx:100809139 506.523