Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00016 ATGGCCACCAGTTTTCAGGGGCATAGGGAGTGGATTAATGAAGTGAACTTATTGGGTGTAATCAAGCATCCAAATCTGGTGAGGTTAGTGGGTTACTGCGCAGAAGATGATGAAAGAGGGATTCAAAGACTTTTGGTGTATGAGCTTATGCCTAATAAGAGCTTGGAAGACCATCTTTTGGCTCGAGTTCCATCAACACTCCCATGGACGACTAGATTAAAGATTGCTCAAGATGCTGCTCGTGGTTTGGCATACCTTCATGAAGATATGGATTTTCAGCTAATATTTCGAGATTTTAAGACGTCCAACATCTTGCTTGATGAGGACTTCAATGCAAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGACCCTCAGAAGGGTTTGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGTTATGCTGCGCCAGAGTATGTTCAGACTGGTAAGCTGACTGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCTGTTGAAAGAAACCTACCAAAAAATGAACAAAAACTTTTGGAGTGGGTAAGACCTTATGTTTCTGATCCTAGGAGGTTCAATCTTATTGTAGACCCTCGACTTGAAGGACAGTATTGCATCAAATCAGCTCATAAACTTGCTACCCTAGCAAACAAGTGTCTCATGAAGCAGCCAAAGTCCCGTCCAAAAATGAGTGAGGTGGTTGAGTTTCTTGGAAGCATTATTAATGAGACAGTTCCTCAGGATGAATATATTTCCCAAGATGTCGTAGCAACTGGAGAAGAAAAAGAAGTAAAGTTATCTGTAGAGGACACTGAACCTGAACCAGCTAAACAGGGGAATAATTATCTGAAGAAGGTCTTTGAATTCAGAGACATGGTCAGCTTAAGAAATAAGTCTATTGGAAGGTTGGATTGGAAAAATTGGGCGCCTGGCTTAATAAGAACTTGGTGA 975 0.4185 MATSFQGHREWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYELMPNKSLEDHLLARVPSTLPWTTRLKIAQDAARGLAYLHEDMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGFGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRPYVSDPRRFNLIVDPRLEGQYCIKSAHKLATLANKCLMKQPKSRPKMSEVVEFLGSIINETVPQDEYISQDVVATGEEKEVKLSVEDTEPEPAKQGNNYLKKVFEFRDMVSLRNKSIGRLDWKNWAPGLIRTW 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00016 324 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 50 258 - -
Gabi1232g00016 324 PANTHER OS01G0588500 PROTEIN-RELATED 6 247 - -
Gabi1232g00016 324 Pfam Protein kinase domain 9 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1232g00016 324 Gene3D Transferase(Phosphotransferase) domain 1 51 270 - -
Gabi1232g00016 324 Gene3D Phosphorylase Kinase; domain 1 1 50 - -
Gabi1232g00016 324 SUPERFAMILY Protein kinase-like (PK-like) 6 245 IPR011009 -
Gabi1232g00016 324 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00016 Gabi-Chr1232 109009 111371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00016 5 271 Glycoside Hydrolase AT3G07070 48.227 6.43e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1232g00016 Pkinase 4.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00016 - - gmx:100305425 575.859