Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00015 ATGAAGTGCTTTCATTTCACAAACGGAGAGAGGCGAGGAGATGAGGAAGAGGGAGTAGTAAGGGCTTCGAGGGTGTCATGGGCACGCTCACTCAGCCTCATGGATACACGCAGGTCCGAGTTTGACTCCGAGTCAAGGGACTTCTCCGACACGGTTGGGTTCCACGAGTTCCTGTCGCAGCGGCGAGCCAACCACCTCCGAATCTTCTCCTTCTCGGAGCTTAAATCCGCTACACGTGGCTTCAGCAGAGCCCTCTTGATTGGAGAGGGAGGCTTTGGTTGCGTCTACAGAGGGTTTCTTAATCACAATCATCGTTCCCAAATCGATGTTGCTATCAAGCAGTTGAATCGTAATGGCCACCAGGGGCATAGGGAGTGGATTAATGAAGTGAACTTATTGGGTGTAATCAAGCATCCAAATCTGGTGAGGTTAGTGGGTTACTGCGCAGAAGATGATGAAAGAGGGATTCAAAGACTTTTGGTGTATGAGCTTATGCCTAATAAGAGCTTGGAAGACCATCTTTTGGCTCGAGTTCCATCAACACTCCCATGGACGACTAGATTAAAGATTGCTCAAGATGCTGCTCGTGGTTTGGCATACCTTCATGAAGATATGGATTTTCAGCTAATATTTCGAGATTTTAAGACGTCCAACATCTTGCTTGATGAGGACTTCAATGCAAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGACCCTCAGAAGGGTTTGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGTTATGCTGCGCCAGAGTATGTTCAGACTGGTAAGCTGACTGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCTGTTGAAAGAAACCTACCAAAAAATGAACAAAAACTTTTGGAGTGGGTAAGACCTTATGTTTCTGATCCTAGGAGGTTCAATCTTATTGTAGACCCTCGACTTGAAGGACAGTATTGCATCAAATCAGCTCATAAACTTGCTACCCTAGCAAACAAGTGTCTCATGAAGCAGCCAAAGTCCCGTCCAAAAATGAGTGAGGTGGTTGAGTTTCTTGGAAGCATTATTAATGAGACAGTTCCTCAGGATGAATATATTTCCCAAGATGTCGTAGCAACTGGAGAAGAAAAAGAAGTAAAGTTATCTGTAGAGGACACTGAACCTGAACCAGCTAAACAGGGGAATAATTATCTGAAGAAGGTCTTTGAATTCAGAGACATGGTCAGCTTAAGAAATAAGTCTATTGGAAGGTTGGATTGGAAAAATTGGGCGCCTGGCTTAATAAGAACTTGGTGA 1320 0.4477 MKCFHFTNGERRGDEEEGVVRASRVSWARSLSLMDTRRSEFDSESRDFSDTVGFHEFLSQRRANHLRIFSFSELKSATRGFSRALLIGEGGFGCVYRGFLNHNHRSQIDVAIKQLNRNGHQGHREWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYELMPNKSLEDHLLARVPSTLPWTTRLKIAQDAARGLAYLHEDMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGFGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRPYVSDPRRFNLIVDPRLEGQYCIKSAHKLATLANKCLMKQPKSRPKMSEVVEFLGSIINETVPQDEYISQDVVATGEEKEVKLSVEDTEPEPAKQGNNYLKKVFEFRDMVSLRNKSIGRLDWKNWAPGLIRTW 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00015 439 Gene3D Transferase(Phosphotransferase) domain 1 165 385 - -
Gabi1232g00015 439 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Gabi1232g00015 439 ProSitePatterns Protein kinases ATP-binding region signature. 87 113 IPR017441 GO:0005524
Gabi1232g00015 439 Pfam Protein tyrosine and serine/threonine kinase 87 360 IPR001245 GO:0004672|GO:0006468
Gabi1232g00015 439 PANTHER OS01G0588500 PROTEIN-RELATED 61 362 - -
Gabi1232g00015 439 FunFam Serine/threonine-protein kinase BIK1 51 164 - -
Gabi1232g00015 439 CDD STKc_IRAK 87 363 - -
Gabi1232g00015 439 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 165 373 - -
Gabi1232g00015 439 SUPERFAMILY Protein kinase-like (PK-like) 62 360 IPR011009 -
Gabi1232g00015 439 ProSiteProfiles Protein kinase domain profile. 81 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00015 Gabi-Chr1232 109007 111682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00015 67 386 Glycoside Hydrolase AT3G07070 48.955 2.51e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1232g00015 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00015 - - gmx:100305425 721.079