Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00014 ATGAAGTGCTTTCATTTCACAAACGGAGAGAGGCGAGGAGATGAGGAAGAGGGAGTAGTAAGGGCTTCGAGGGTGTCATGGGCACGCTCACTCAGCCTCATGGATACACGCAGGTCCGAGTTTGACTCCGAGTCAAGGGACTTCTCCGACACGGTTGGGTTCCACGAGTTCCTGTCGCAGCGGCGAGCCAACCACCTCCGAATCTTCTCCTTCTCGGAGCTTAAATCCGCTACACGTGGCTTCAGCAGAGCCCTCTTGATTGGAGAGGGAGGCTTTGGTTGCGTCTACAGAGGGTTTCTTAATCACAATCATCGTTCCCAAATCGATGTTGCTATCAAGCAGTTGAATCGTAATGGCCACCAGGCATGCTTTTGCATTTCTAGTTTTCAGGGGCATAGGGAGTGGATTAATGAAGTGAACTTATTGGGTGTAATCAAGCATCCAAATCTGGTGAGGTTAGTGGGTTACTGCGCAGAAGATGATGAAAGAGGGATTCAAAGACTTTTGGTGTATGAGCTTATGCCTAATAAGAGCTTGGAAGACCATCTTTTGGCTCGAGTTCCATCAACACTCCCATGGACGACTAGATTAAAGATTGCTCAAGATGCTGCTCGTGGTTTGGCATACCTTCATGAAGATATGGATTTTCAGCTAATATTTCGAGATTTTAAGACGTCCAACATCTTGCTTGATGAGGACTTCAATGCAAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGACCCTCAGAAGGGTTTGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGTTATGCTGCGCCAGAGTATGTTCAGACTGGTAAGCTGACTGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCTGTTGAAAGAAACCTACCAAAAAATGAACAAAAACTTTTGGAGTGGGTAAGACCTTATGTTTCTGATCCTAGGAGGTTCAATCTTATTGTAGACCCTCGACTTGAAGGACAGTATTGCATCAAATCAGCTCATAAACTTGCTACCCTAGCAAACAAGTGTCTCATGAAGCAGCCAAAGTCCCGTCCAAAAATGAGTGAGGTGGTTGAGTTTCTTGGAAGCATTATTAATGAGACAGTTCCTCAGGATGAATATATTTCCCAAGATGTCGTAGCAACTGGAGAAGAAAAAGAAGTAAAGTTATCTGTAGAGGACACTGAACCTGAACCAGCTAAACAGGGGAATAATTATCTGAAGAAGGTCTTTGAATTCAGAGACATGGTCAGCTTAAGAAATAAGTCTATTGGAAGGTTGGATTGGAAAAATTGGGCGCCTGGCTTAATAAGAACTTGGTGA 1347 0.4462 MKCFHFTNGERRGDEEEGVVRASRVSWARSLSLMDTRRSEFDSESRDFSDTVGFHEFLSQRRANHLRIFSFSELKSATRGFSRALLIGEGGFGCVYRGFLNHNHRSQIDVAIKQLNRNGHQACFCISSFQGHREWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYELMPNKSLEDHLLARVPSTLPWTTRLKIAQDAARGLAYLHEDMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGFGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRPYVSDPRRFNLIVDPRLEGQYCIKSAHKLATLANKCLMKQPKSRPKMSEVVEFLGSIINETVPQDEYISQDVVATGEEKEVKLSVEDTEPEPAKQGNNYLKKVFEFRDMVSLRNKSIGRLDWKNWAPGLIRTW 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00014 448 Gene3D Transferase(Phosphotransferase) domain 1 174 394 - -
Gabi1232g00014 448 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 174 382 - -
Gabi1232g00014 448 CDD STKc_IRAK 87 372 - -
Gabi1232g00014 448 ProSiteProfiles Protein kinase domain profile. 81 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1232g00014 448 ProSitePatterns Protein kinases ATP-binding region signature. 87 113 IPR017441 GO:0005524
Gabi1232g00014 448 Gene3D Phosphorylase Kinase; domain 1 59 173 - -
Gabi1232g00014 448 Pfam Protein tyrosine and serine/threonine kinase 87 369 IPR001245 GO:0004672|GO:0006468
Gabi1232g00014 448 PANTHER OS01G0588500 PROTEIN-RELATED 63 371 - -
Gabi1232g00014 448 SUPERFAMILY Protein kinase-like (PK-like) 62 369 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00014 Gabi-Chr1232 109006 111682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00014 67 395 Glycoside Hydrolase AT3G07070 47.674 8.50e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1232g00014 PK_Tyr_Ser-Thr 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00014 - - gmx:100305425 713.375