Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00012 ATGGGAATTTGTTTTAGCATCCATATTAAAGCTGAGAGCCAATATCTCACTGGGTTAAGTTCAAAGTATGCGAGTTCCGATGCAAATGATCTCAGAAGCCCAAGTAGTAAGGTTGAAAATGATCTCAGCAGCCCAAGTAGTAAGGTCTCAGTGCCTCAGACTCCACGGAGTGAGGATGAGATCTTGCAATCATCCAATCTGAATAGCTTTGCTTTCACAGAACTTAAGGCTGCCACCAGAAATTTTCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGACCAATCACTGGTTGCTGCCAAACCTGGCACTGGCACTGTTGTTGCTGTGAAAAGTCTTAATAAGGATGGCTTACAAGGTCACAAGGAGTGGTTGGCTGAAGTCAACTATCTAGGCCAGCTTTCTCATCCTCATCTAGTGAAATTGATTGGCTATTGTGTTGAAGATGAAAACCGCCTTCTGGTATATGAATTCATGCCTCGTGGCAGCTTGGAGAATCACTTGTTCAGGAGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTGCGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATCTATCGAGATTTCAAGACTTCAAATATCTTGCTTGATTCAAATTATAATGCAAAACTCTCTGATTTTGGGCTGGCAAAGGACGGACCAACAGGTGACAAAAGTCATGTCTCAACCAGGGTAATTGGAACATATGGATACGCAGCTCCTGAATATCTAGCCACTGGTCATCTCACTGCTAGGAGTGATGTCTATAGTTTTGGAGTTGTACTACTTGAAATGTTATCAGGAAGGCGTGCTGTTGACATGAATAGACCTTCAGGACAGCACAATTTGGTGCAATGGGCTAAGCCATACTTAGCCAACAAGCGTAAGATTTTGCGTGTGTTGGATAACCGTCTTGAAGGGCAATATGAAATAGATGAGGCCTATAAGGTAGCTACAGTCTCTCTACGATGCCTTTCAATAGAATCCAAGTTGAGACCACACATGGACGAGGTTGTTACAAATTTGGAGAAGCTGCAGGTTCCTCATGTTAATCAAGGCAATCGAAATGGCTCTCGTGTTCGTAGAAAAAGTGCTGATGATGTTTCCCGTGGTAGAATCATCACACCTTATCCCCGCCCCAATGCTTCTCCACTCTCTACATGA 1230 0.4358 MGICFSIHIKAESQYLTGLSSKYASSDANDLRSPSSKVENDLSSPSSKVSVPQTPRSEDEILQSSNLNSFAFTELKAATRNFRPDSVLGEGGFGSVFKGWIDDQSLVAAKPGTGTVVAVKSLNKDGLQGHKEWLAEVNYLGQLSHPHLVKLIGYCVEDENRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVIGTYGYAAPEYLATGHLTARSDVYSFGVVLLEMLSGRRAVDMNRPSGQHNLVQWAKPYLANKRKILRVLDNRLEGQYEIDEAYKVATVSLRCLSIESKLRPHMDEVVTNLEKLQVPHVNQGNRNGSRVRRKSADDVSRGRIITPYPRPNASPLST 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00012 409 FunFam Serine/threonine-protein kinase BIK1 49 167 - -
Gabi1232g00012 409 CDD STKc_IRAK 88 367 - -
Gabi1232g00012 409 SUPERFAMILY Protein kinase-like (PK-like) 49 363 IPR011009 -
Gabi1232g00012 409 Gene3D Phosphorylase Kinase; domain 1 56 167 - -
Gabi1232g00012 409 ProSitePatterns Protein kinases ATP-binding region signature. 88 120 IPR017441 GO:0005524
Gabi1232g00012 409 MobiDBLite consensus disorder prediction 368 409 - -
Gabi1232g00012 409 Pfam Protein tyrosine and serine/threonine kinase 86 364 IPR001245 GO:0004672|GO:0006468
Gabi1232g00012 409 MobiDBLite consensus disorder prediction 24 59 - -
Gabi1232g00012 409 ProSiteProfiles Protein kinase domain profile. 82 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1232g00012 409 Gene3D Transferase(Phosphotransferase) domain 1 168 389 - -
Gabi1232g00012 409 PANTHER OS01G0588500 PROTEIN-RELATED 45 368 - -
Gabi1232g00012 409 FunFam Probable serine/threonine-protein kinase PBL8 168 384 - -
Gabi1232g00012 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00012 Gabi-Chr1232 104786 107867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00012 39 364 Glycoside Hydrolase AT3G07070 48.788 4.14e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1232g00012 PK_Tyr_Ser-Thr 6.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00012 - - gmx:100798404 644.039