Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00008 ATGGGTAACGGAATAGGAAAGCTAACTGTGTGTTTCACCGGCAACGGAGGAGGCGGTCGCCGGAAGCAGGACATATCGATTTTTATAACGGAGCCACTGGATGAGGGACTTGGCCACTCCTTCTGCTACGTTCGACCCGACCCGACCCGGATATCTTCATCGAAGGTCCACTCAGAAGAAACCACGACGTTCAGAACAATCTCCGGTGCATCGGTGAGCGCGAACACGTCGACGCCGCTCTCGACGTCGCTCGTGGACTTGTACTCCTACGGTTGCATCGATAGAGCTGCGGCTTTTGAGAGTTCAACCTCGTTTGCTTCGCTTCCTCTGCAACCGATTCCGAGAAATCTCATGAGTTCGGGTCCCTTTTCAGGGAATCTGGGTGGTGGGGTTCCGGGTTCGGGTCCTATGGAGAGAGGGTTCTTGTCGGGTCCAATCGAGCGTGGGTTCATGTCGGGTCCAATCGATCGCGGGTTGTTTTCGGGTCCGATGGAAAAGGATAGCTCCGATCAGTTTCAAAGAAGCTTCTCGCATGGGGGTTTAGGTTTTGGTTTAAGACCAAGAACAAGGAAGGGTCGGTGGATTCGGATTCTTCGGAGGGCGATTTCGAAGACTCTGTCTCGTGGGCAAAACTCGATTGTTGCTCCGATCAAAGGTGGGGTAAAGGAACCGGAGTGGATCGTTGCGGCGGAGAAGCACCACAACGAGAATTTAACGGTGAGCAGTGTGAATCTGAGTAGCGAGGGTAGTTTGGAAGACGATGATTCAATGGAAAATCAGAATCTTCAATGGGCTCAGGGGAAAGCAGGTGAGGATCGTGTTCACGTGGTAGTTTCAGAGGAACACGGTTGGGTTTTCGTGGGGATTTACGATGGTTTCAATGGTCCTGATGCACCTGATTACCTCCTTTCAAATCTATACACCGCCGTGCATAAGGAACTGAAGGGTTTGTTGTGGGATGATGGGGTTCCTCTAGAGAATTCGAATTTGGAAGTGCGAGATTCGATTCCATTCGATGATGCTAAGAAATGGGAGGAGAATCAAAGGAGGTGGAAGTGTGAATGGGATCGTGAAAGAGTAGAGCTTGATAGAAGATTGAAGGAACAGCTAAGTCTAAGTCGATCTGGTTCTGGTGGAACCAACTCTATTAATCATTCAGATGTTTTGGAAGCTCTCTCTCGAGCTCTCAGGAAAACAGAAGAGTCTTATCTTGATGTTGCGGATAAGATGGTTGGGGAGAATCCTGAACTTGCTTTGATGGGTTCTTGTGTTCTTGTGATGTTAATGAAGGGGGAAGATGTTTATGTGATGAATGTAGGTGATAGTAGAGCTGTGCTGGCTCAAAAGGCTGAGCCTGATTATTGGCTTGGGAAAATCAGACAGGACTTGGAGAGGATCAATGAAGAGACAATGAATGATCTTGAATCATGGGATGTTGATACATCAAACTTGGTTCCTAGTCTAAGTGCAATTCAGCTTACCAAGGATCATAGTACCAATGTTGAAGAAGAAGTCCAGAGAATAAAAAAAGAGCACCCAGATGATACTTGTGCTGTAGTAAATGATCGTGTTAAGGGTTCTCTCAAGGTTACCCGAGCATTTGGTGCTGGATTTCTCAAACAGCCCAAGTGGAACAATGCACTTCTGGAAATGTTTAGAATAGACTATGTAGGAAATTCTCCTTACATAAGCTGTCTACCATATCTAAAACACCACAGATTAGGCCCAAAGGATAAATTTTTGATATTATGCTCCGATGGGCTCTATCAATACTTGTCAAACGAAGAAGCAGTTGCTGAAGTTGAGCTTTTCATCACATTGCAACCTGAGGGAGACCCGGCTCAGCATTTGGTTGAAGAAGTGTTATTTCGTGCTGCTAAGAAAGCTGGTTTGGACTTTCACGAATTGCTCGAAATTCCACAGGGTGATAGGCGTCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAGGGAAGGATATGGAGATCATGTGTATAA 2004 0.4651 MGNGIGKLTVCFTGNGGGGRRKQDISIFITEPLDEGLGHSFCYVRPDPTRISSSKVHSEETTTFRTISGASVSANTSTPLSTSLVDLYSYGCIDRAAAFESSTSFASLPLQPIPRNLMSSGPFSGNLGGGVPGSGPMERGFLSGPIERGFMSGPIDRGLFSGPMEKDSSDQFQRSFSHGGLGFGLRPRTRKGRWIRILRRAISKTLSRGQNSIVAPIKGGVKEPEWIVAAEKHHNENLTVSSVNLSSEGSLEDDDSMENQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYTAVHKELKGLLWDDGVPLENSNLEVRDSIPFDDAKKWEENQRRWKCEWDRERVELDRRLKEQLSLSRSGSGGTNSINHSDVLEALSRALRKTEESYLDVADKMVGENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEETMNDLESWDVDTSNLVPSLSAIQLTKDHSTNVEEEVQRIKKEHPDDTCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYISCLPYLKHHRLGPKDKFLILCSDGLYQYLSNEEAVAEVELFITLQPEGDPAQHLVEEVLFRAAKKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00008 667 Gene3D - 231 663 IPR036457 -
Gabi1232g00008 667 CDD PP2Cc 268 658 IPR001932 -
Gabi1232g00008 667 SUPERFAMILY PP2C-like 268 659 IPR036457 -
Gabi1232g00008 667 Pfam Protein phosphatase 2C 380 614 IPR001932 -
Gabi1232g00008 667 FunFam probable protein phosphatase 2C 4 229 663 - -
Gabi1232g00008 667 SMART PP2C_4 255 656 IPR001932 -
Gabi1232g00008 667 ProSiteProfiles PPM-type phosphatase domain profile. 253 658 IPR001932 -
Gabi1232g00008 667 PANTHER PROTEIN PHOSPHATASE 2C 252 656 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00008 Gabi-Chr1232 47332 50447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00008 1 667 PP2C-type Phosphatase Gene Family AT1G07630 74.265 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00008 - - gmx:100812903 1154.04