Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00005 ATGAAAGTCAATATGAATTCCAGTACAGCAAATTATGTTGCCAAAAATGCACCCCCTTTCTGTGAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCCTCCTTCTTTGTCTTCATGTGCTCAACCTGAGACCACAACTGCAGAAAGCTTGAGTTGTAGATCTTTTCAATATGGTATGAATGATTTATTCCATTCAGAATGTCTTCAATCAGATTCTACAAGTACAAGGACTACGGTGTGTACTGGAATTGAATTTTGGGTTCAGAGTGAAATCATTGAAACAGAAGCCACTTTTTCATCCAAATCATCCAGTTGTGGCAGTCATTGCTCTCCCCAAAATTCTGCTGGGAGGTATTTAAGTACTCATTCAGAGGTTGAGGAAGAAACAGTTAATAGTCAACTCGTTGGAGCCAAAAGAGAAGCTGATGAAGAAACAGACGAGGCTTTTACAGAGCTGTTGAAGTGCAAAAGGTTGGAAGTGAAAGCCATTGAGGCCATAAATAAAGTCAAATTGCTTGAATCTGCCCATTTACATGAAGTAAAGCTCAGAAAAGAGGTTGAGAATGTACTGAGAGCTACAGTACAGGAGCAACAAAAGTTCTTGGATGAGAAAGAAAGAATTGCTATTGAGCTGCAAAGGACCATGAGAAGTATTGCCCTGCTAGACAGTTGTGCACAGGAAACAAACCATAGGCGAAATGAAGCTGCAGATGAACTATCACTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAAACAACAGATCAGGCGACAGAGAATGGAAGCCCTACGCTGCCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCTGCTCACTGCAATGGGGTCATTGGATTTGCTGAAGGATTACCTCAGCTAGCAGAATTTACATTATCAGATCTTCAAAATGCCACATGCAATTTTTCTGAGAGCTTTAAATTTAGGGAGGGTGGATATGGCTCTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTGTAAGGAAGCTTCATCCACATAATATGCAAGGACCAGCAGGGTTTCATCAAGAGGTTCAGGTTCTTGGTAGTATACAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCTCTGAAGCCTGGTCATTTGTATATGAGTACTTGCCCAATGGAAGTGTTCATGACTACATATTTCGAAAAAGCAGTGTTTCCCCTTTGACATGGAAAACCCGAGCACGATGGATTGCTGAAATTGCTACAGCTCTCGGCTTCTTACATTCTTCCAAACCTGAAACTATCATCCATGGTGATCTGAAGCTCGAAACTGTCCTTCTTGATTCTGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGTAGGCTGGTGAAAGAGGAGTCACTCTATCTTCCTAGTTTCCGATTCAGTAGCACTGAGCCAAATGGTTCCTTTACACACACAGATCCAGAGTTTCAGAGAACAGGAGTACTAACACCTAAGTCTGACATATACTCCTTTGGTTTCATCATTTTGCAACTCCTCACTGGTAGAGCTTCGGTTGGATTAGCTGGTGAAGTACGCAAAGCAGTTTTTTGTGGAAATTTGTTTTCCATTTTAGATTCTTCAGCTGGAGAATGGCATCCTGTTGTGGCAAAACGGTTGGTTGAATTGGGATTGCAGTGCTGTCGTCCAAATAGTAGAGACAGACCAGAGTTAACACCTACTCTAGTGAGGGAATTGAAGCAGTTGCATGTTTCAGAAGAGAGACCCGTGCCATCTTTTTTCTTGTGTCCAATCCTTCAGGAAATAATGTATGATCCTCAAGTTGCAGCAGATGGATTTACTTATGAAGGGGAGGCCATATGTGAATGGTTGCAAAATAGGCACCAAACTTCTCCCATGACTAATTTAAAATTGAGTCACCTGCATCTTACTCCGAATCATACACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGA 1989 0.4168 MKVNMNSSTANYVAKNAPPFCEIWFIYKGKHIWTREASETPPSLSSCAQPETTTAESLSCRSFQYGMNDLFHSECLQSDSTSTRTTVCTGIEFWVQSEIIETEATFSSKSSSCGSHCSPQNSAGRYLSTHSEVEEETVNSQLVGAKREADEETDEAFTELLKCKRLEVKAIEAINKVKLLESAHLHEVKLRKEVENVLRATVQEQQKFLDEKERIAIELQRTMRSIALLDSCAQETNHRRNEAADELSLIQASISTLWHEKQQIRRQRMEALRCLERWKSRGQVGAAHCNGVIGFAEGLPQLAEFTLSDLQNATCNFSESFKFREGGYGSIYKGEMLGRTVAVRKLHPHNMQGPAGFHQEVQVLGSIQHPHLLTLLGVCSEAWSFVYEYLPNGSVHDYIFRKSSVSPLTWKTRARWIAEIATALGFLHSSKPETIIHGDLKLETVLLDSALSCKICEFGFSRLVKEESLYLPSFRFSSTEPNGSFTHTDPEFQRTGVLTPKSDIYSFGFIILQLLTGRASVGLAGEVRKAVFCGNLFSILDSSAGEWHPVVAKRLVELGLQCCRPNSRDRPELTPTLVRELKQLHVSEERPVPSFFLCPILQEIMYDPQVAADGFTYEGEAICEWLQNRHQTSPMTNLKLSHLHLTPNHTLRLAIQGWLCKS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00005 662 Pfam U-box domain 592 661 IPR003613 GO:0004842|GO:0016567
Gabi1232g00005 662 SUPERFAMILY RING/U-box 589 661 - -
Gabi1232g00005 662 PANTHER OS02G0152300 PROTEIN 5 656 - -
Gabi1232g00005 662 Pfam Protein tyrosine and serine/threonine kinase 325 573 IPR001245 GO:0004672|GO:0006468
Gabi1232g00005 662 ProSiteProfiles Protein kinase domain profile. 317 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1232g00005 662 CDD RING-Ubox_WDSUB1-like 593 648 - -
Gabi1232g00005 662 SMART Ubox_2 595 658 IPR003613 GO:0004842|GO:0016567
Gabi1232g00005 662 Coils Coil 163 183 - -
Gabi1232g00005 662 SUPERFAMILY Protein kinase-like (PK-like) 301 579 IPR011009 -
Gabi1232g00005 662 ProSiteProfiles U-box domain profile. 591 662 IPR003613 GO:0004842|GO:0016567
Gabi1232g00005 662 Gene3D Transferase(Phosphotransferase) domain 1 390 591 - -
Gabi1232g00005 662 Gene3D Phosphorylase Kinase; domain 1 295 389 - -
Gabi1232g00005 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 662 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00005 Gabi-Chr1232 36140 41702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00005 4 659 U-box Gene Family AT2G45910 36.632 2.98e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi1232g00005 PK_Tyr_Ser-Thr 3.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00005 - - gmx:100799032 1027.31