Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1232g00004 ATGGAAGAGTATGATGAGAAAGTGCACGTAGCAGTTGGGAAGTCGGTGAAAAAAGCCATGGCTTTGCTTCAATGGAGTTTCACTCAGTTTAGGAACAAACAGATTCACTTACTTCATGTTTACCAACCTTCTACTATGATCCCCACACTATTAGGAAAATTGCCAGCATCCAAAGCTAGTCCTGAAGTAGTATCTGCTTTTAGAATAGAGGAAAGAGAACAGACCAAGAGGCTTTTGGAGAAGTACTTGAGCATTTGCCGTTCGGCCAAGGTTAAAGCAAGCAGTGTCATAGGTGAAGCTGATGAAATCCAGAAAGGAATTGTTGCTTTGGTTATTAAGCATAATAGCAGGAAGCTCGTTATTGGAGCAATACCAGAAAATTGCATGAAAGTCAATATGAATTCCAGTACAGCAAATTATGTTGCCAAAAATGCACCCCCTTTCTGTGAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCCTCCTTCTTTGTCTTCATGTGCTCAACCTGAGACCACAACTGCAGAAAGCTTGAGTTGTAGATCTTTTCAATATGGTATGAATGATTTATTCCATTCAGAATGTCTTCAATCAGATTCTACAAGTACAAGGACTACGGTGTGTACTGGAATTGAATTTTGGGTTCAGAGTGAAATCATTGAAACAGAAGCCACTTTTTCATCCAAATCATCCAGTTGTGGCAGTCATTGCTCTCCCCAAAATTCTGCTGGGAGGTATTTAAGTACTCATTCAGAGGTTGAGGAAGAAACAGTTAATAGTCAACTCGTTGGAGCCAAAAGAGAAGCTGATGAAGAAACAGACGAGGCTTTTACAGAGCTGTTGAAGTGCAAAAGGTTGGAAGTGAAAGCCATTGAGGCCATAAATAAAGTCAAATTGCTTGAATCTGCCCATTTACATGAAGTAAAGCTCAGAAAAGAGGTTGAGAATGTACTGAGAGCTACAGTACAGGAGCAACAAAAGTTCTTGGATGAGAAAGAAAGAATTGCTATTGAGCTGCAAAGGACCATGAGAAGTATTGCCCTGCTAGACAGTTGTGCACAGGAAACAAACCATAGGCGAAATGAAGCTGCAGATGAACTATCACTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAAACAACAGATCAGGCGACAGAGAATGGAAGCCCTACGCTGCCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCTGCTCACTGCAATGGGGTCATTGGATTTGCTGAAGGATTACCTCAGCTAGCAGAATTTACATTATCAGATCTTCAAAATGCCACATGCAATTTTTCTGAGAGCTTTAAATTTAGGGAGGGTGGATATGGCTCTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTGTAAGGAAGCTTCATCCACATAATATGCAAGGACCAGCAGGGTTTCATCAAGAGGTTCAGGTTCTTGGTAGTATACAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCTCTGAAGCCTGGTCATTTGTATATGAGTACTTGCCCAATGGAAGTGTTCATGACTACATATTTCGAAAAAGCAGTGTTTCCCCTTTGACATGGAAAACCCGAGCACGATGGATTGCTGAAATTGCTACAGCTCTCGGCTTCTTACATTCTTCCAAACCTGAAACTATCATCCATGGTGATCTGAAGCTCGAAACTGTCCTTCTTGATTCTGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGTAGGCTGGTGAAAGAGGAGTCACTCTATCTTCCTAGTTTCCGATTCAGTAGCACTGAGCCAAATGGTTCCTTTACACACACAGATCCAGAGTTTCAGAGAACAGGAGTACTAACACCTAAGTCTGACATATACTCCTTTGGTTTCATCATTTTGCAACTCCTCACTGGTAGAGCTTCGGTTGGATTAGCTGGTGAAGTACGCAAAGCAGTTTTTTGTGGAAATTTGTTTTCCATTTTAGATTCTTCAGCTGGAGAATGGCATCCTGTTGTGGCAAAACGGTTGGTTGAATTGGGATTGCAGTGCTGTCGTCCAAATAGTAGAGACAGACCAGAGTTAACACCTACTCTAGTGAGGGAATTGAAGCAGTTGCATGTTTCAGAAGAGAGACCCGTGCCATCTTTTTTCTTGTGTCCAATCCTTCAGGAAATAATGTATGATCCTCAAGTTGCAGCAGATGGATTTACTTATGAAGGGGAGGCCATATGTGAATGGTTGCAAAATAGGCACCAAACTTCTCCCATGACTAATTTAAAATTGAGTCACCTGCATCTTACTCCGAATCATACACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGA 2373 0.4159 MEEYDEKVHVAVGKSVKKAMALLQWSFTQFRNKQIHLLHVYQPSTMIPTLLGKLPASKASPEVVSAFRIEEREQTKRLLEKYLSICRSAKVKASSVIGEADEIQKGIVALVIKHNSRKLVIGAIPENCMKVNMNSSTANYVAKNAPPFCEIWFIYKGKHIWTREASETPPSLSSCAQPETTTAESLSCRSFQYGMNDLFHSECLQSDSTSTRTTVCTGIEFWVQSEIIETEATFSSKSSSCGSHCSPQNSAGRYLSTHSEVEEETVNSQLVGAKREADEETDEAFTELLKCKRLEVKAIEAINKVKLLESAHLHEVKLRKEVENVLRATVQEQQKFLDEKERIAIELQRTMRSIALLDSCAQETNHRRNEAADELSLIQASISTLWHEKQQIRRQRMEALRCLERWKSRGQVGAAHCNGVIGFAEGLPQLAEFTLSDLQNATCNFSESFKFREGGYGSIYKGEMLGRTVAVRKLHPHNMQGPAGFHQEVQVLGSIQHPHLLTLLGVCSEAWSFVYEYLPNGSVHDYIFRKSSVSPLTWKTRARWIAEIATALGFLHSSKPETIIHGDLKLETVLLDSALSCKICEFGFSRLVKEESLYLPSFRFSSTEPNGSFTHTDPEFQRTGVLTPKSDIYSFGFIILQLLTGRASVGLAGEVRKAVFCGNLFSILDSSAGEWHPVVAKRLVELGLQCCRPNSRDRPELTPTLVRELKQLHVSEERPVPSFFLCPILQEIMYDPQVAADGFTYEGEAICEWLQNRHQTSPMTNLKLSHLHLTPNHTLRLAIQGWLCKS 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1232g00004 790 Gene3D Transferase(Phosphotransferase) domain 1 518 719 - -
Gabi1232g00004 790 PANTHER OS02G0152300 PROTEIN 8 784 - -
Gabi1232g00004 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 720 790 IPR013083 -
Gabi1232g00004 790 SUPERFAMILY RING/U-box 717 789 - -
Gabi1232g00004 790 Gene3D Phosphorylase Kinase; domain 1 423 517 - -
Gabi1232g00004 790 Gene3D HUPs 6 154 IPR014729 -
Gabi1232g00004 790 CDD RING-Ubox_WDSUB1-like 721 776 - -
Gabi1232g00004 790 CDD STK_N 7 157 - -
Gabi1232g00004 790 Pfam U-box domain 720 789 IPR003613 GO:0004842|GO:0016567
Gabi1232g00004 790 ProSiteProfiles Protein kinase domain profile. 445 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1232g00004 790 Coils Coil 291 311 - -
Gabi1232g00004 790 Pfam Protein tyrosine and serine/threonine kinase 453 701 IPR001245 GO:0004672|GO:0006468
Gabi1232g00004 790 SUPERFAMILY Protein kinase-like (PK-like) 429 707 IPR011009 -
Gabi1232g00004 790 ProSiteProfiles U-box domain profile. 719 790 IPR003613 GO:0004842|GO:0016567
Gabi1232g00004 790 SMART Ubox_2 723 786 IPR003613 GO:0004842|GO:0016567
Gabi1232g00004 790 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1232g00004 Gabi-Chr1232 35838 41702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1232g00004 5 787 U-box Gene Family AT2G45910 36.927 3.29e-164 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi1232g00004 PK_Tyr_Ser-Thr 5.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1232g00004 - - gmx:100799032 1223.76