Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1230g00016 ATGTCAAATATGGATACCTATGCCAATACATGTGAGATAGTGGAATCAAGGGTGGAGATAATTTCTGAGATTAGTTGTGCTCACAAATCAGGAAAAAAATATTCGATTGAGGATGATATCAATCATCTTTTCCAGGCTATTGACATTAAAAGTTCATGTAGAGGTCCTAGTACATCACGTTCACAAAAGAGTGCTCTTAAAAGGCCAATAAAAGTCAGTTCATCTCAGGCATCAGGAATTGGCATCTCGGAGCCTGTAAGTTTAAAGCAGGCACTTAGAGGGTTGTGCATATCTCAGGCATCGGAAATGGCTGCTTTGAAGAGACTGTCAAAGCCATGCAGTTCATCAAGAGTATCGGAGGCTGGCACCATCAAAAAGTTATACACAGCTGTGGTAGATGAGGGGAAAGGGAACTTGGTGGAAATTTCCCTAGTGCCAGAGATATCTGCAGCTTCAGATAAATTGCCCGGTGTAGCTATATCTAGTTCAAGTGCTAATCATTCTATTCCTTTGGTTGATGCAACAAAACCAAAAGCAATGACTACTAGGTTTGCATCCCGGGATCAGATTGTTCCTCTTCCTCCAGAGGTTGAGGGTGACAAGCCAATCATAGGGACTGGAAAACCAATACTTGCAAATCTGTCACCAGTTACTTCTGCAAGTGAGGAAATGCAAGAGGTCAGAATGGATCCTGCTTCCTCGAGCAAATTTTCTCTTGGTTCTTCAATGCCAGATAAGGGGCAAGAAGCAAATTTACATTCTACATCTTGTCCACCTAGCTCTAGCATTGGTAATGTAGTGGATAAACCCACAAGCAGTAATACATGTTTGGCAAGGCCAATATTTAATAACTTTAACTTCCTTAAGAAAAAAGTAAAGCAAGATTTATGTTCTGCCTCGAGCTGCTCTACTCCATGTATGAGAAATGATTTTGGGTCTAGTGCAAGTAATTTGGACAAGGAGACTGGTAATTCTGATTTGAAGCATGAAATGAAAGAAAATGAGAAACTGTCTCCCAGCAGTTCAAAGCACAGCATTGAAGTTAACTCAATTAATGTTAGCATGGATTCAAGCAAATCTGGTTTTAGTTTGAATTGCAATAAGAGAAGTAAGTTTCTTGTGACAAAAGTTGATGAGAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCCCAGAGCTCAAAAAGTAGCATTGGTGAGTATAGTAGTAGCACAAGCATCAGCGAGGAGAGCAATCTAAGTGGTTCCAGTCGCAGTGGCAACAGGCCTCACATGTCAAAACACTTGAGATGGGAAGCTATTCGTGCTGTTCAACAGCAGAATGGTATTTTAAATTTGAGGCACTTCAAGCTGCTGAGGAAGCTTGGTAGTGGGGACATTGGAACTGTTTATCTTGCAGAACTAATTGGAACAAACTGCCTTTTTGCACTGAAAGTGATGGACAATGAATTCTTGGCAAGCCGGAAGAAAATGTTCAGGGCCCAAACTGAAAGAGAGATCCTGCAGATGTTGGATCATCCGTTTCTTCCTACGCTTTATTCCCATATCGCAACAGATAAACTCTCTTGTTTGGTGATGGAGTATTGTCCAGGTGGAGATCTGCATGTCCTGCGACAGAGGCAGCCATATAGGAGTTTCTCGGAACAAGCAGCTAGGTTTTATGTTGCTGAGGTTCTTCTTGCCCTGGAGTATTTACACATGCTCGGAGTTGTATATCGAGATCTTAAGCCAGAAAATATCCTAGTACGAGAAGATGGCCACATAATGCTGACGGATTTTGACTTGTCACTCAGATGTTCTGTCAATCCAATGTTAGTCAAGTCATCTTCACCGGACATGGATGCAACAAGGAAGATGTCCAGTCCCTGTTCAGAGGCTAGCTGCATACACCCTTTCTGTCTCCAACCGGATTGGCAAGTCTCCTGCTTTACTCCCATTCTATTATCTGCCGGAGCAAAATCTCGAAAGATGAAGGCTGACATAGCTGCTCAAGTTGGTCCACTGCCACAGCTTGTAGTGGAGCCTACCAGTGCGCGGTCTAACTCCTTCGTTGGAACATATGAATATCTTGCTCCGGAGATGATCAAAGGTGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTTGGTATATTTTTGTTTGAGCTTTTATATGGTAAGACTCCTTTCAAGGGCCCAGCAAATGAGGACACATTAGCCAATGTTGTCTCACAGAGCCTTAAGTTCCCAGGTGCTCCGATAGTTAGTTTTTATGCAAGAGATTTGATCAGAGGATTGTTGATAAAGGATCCCAAAAATAGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCATCCCTTCTTCGAAGGCCTCAACTGGGCTCTAATACGGTGTGCAGCCCCGCCAGAGCTCCCCAAGTTTCGTGTGTTTGGAAGTAGTGCTCTTTCTATGGTTGCACAGAAAGAGAATGCAGCTGATTTAGAAGATACAGAAGAATGCGAAGAGTTTGAGCTGTTTTAG 2502 0.4265 MSNMDTYANTCEIVESRVEIISEISCAHKSGKKYSIEDDINHLFQAIDIKSSCRGPSTSRSQKSALKRPIKVSSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRVSEAGTIKKLYTAVVDEGKGNLVEISLVPEISAASDKLPGVAISSSSANHSIPLVDATKPKAMTTRFASRDQIVPLPPEVEGDKPIIGTGKPILANLSPVTSASEEMQEVRMDPASSSKFSLGSSMPDKGQEANLHSTSCPPSSSIGNVVDKPTSSNTCLARPIFNNFNFLKKKVKQDLCSASSCSTPCMRNDFGSSASNLDKETGNSDLKHEMKENEKLSPSSSKHSIEVNSINVSMDSSKSGFSLNCNKRSKFLVTKVDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESNLSGSSRSGNRPHMSKHLRWEAIRAVQQQNGILNLRHFKLLRKLGSGDIGTVYLAELIGTNCLFALKVMDNEFLASRKKMFRAQTEREILQMLDHPFLPTLYSHIATDKLSCLVMEYCPGGDLHVLRQRQPYRSFSEQAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDMDATRKMSSPCSEASCIHPFCLQPDWQVSCFTPILLSAGAKSRKMKADIAAQVGPLPQLVVEPTSARSNSFVGTYEYLAPEMIKGEGHGSAVDWWTFGIFLFELLYGKTPFKGPANEDTLANVVSQSLKFPGAPIVSFYARDLIRGLLIKDPKNRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRVFGSSALSMVAQKENAADLEDTEECEEFELF 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1230g00016 833 FunFam Serine/threonine-protein kinase D6PK-like 446 531 - -
Gabi1230g00016 833 ProSiteProfiles Protein kinase domain profile. 448 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1230g00016 833 FunFam serine/threonine-protein kinase D6PK-like 677 800 - -
Gabi1230g00016 833 SUPERFAMILY Protein kinase-like (PK-like) 420 808 IPR011009 -
Gabi1230g00016 833 Gene3D Transferase(Phosphotransferase) domain 1 528 597 - -
Gabi1230g00016 833 Pfam Protein kinase domain 449 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1230g00016 833 Pfam Protein kinase domain 679 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1230g00016 833 SMART serkin_6 448 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1230g00016 833 Gene3D Transferase(Phosphotransferase) domain 1 676 798 - -
Gabi1230g00016 833 PANTHER FLIPPASE KINASE 1-RELATED 324 802 - -
Gabi1230g00016 833 MobiDBLite consensus disorder prediction 390 421 - -
Gabi1230g00016 833 CDD STKc_phototropin_like 446 800 - -
Gabi1230g00016 833 FunFam serine/threonine-protein kinase D6PK-like 532 599 - -
Gabi1230g00016 833 Gene3D Phosphorylase Kinase; domain 1 446 527 - -
Gabi1230g00016 833 MobiDBLite consensus disorder prediction 383 423 - -
Gabi1230g00016 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672|GO:0006468
Gabi1230g00016 833 MobiDBLite consensus disorder prediction 231 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1230g00016 Gabi-Chr1230 182485 187325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1230g00016 373 833 AGC Kinase Gene Family AT3G52890 66.737 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi1230g00016 Pkinase 1.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1230g00016 - - gmx:100784955 1327.77