Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1230g00008 ATGTCCAAGGTGCTTAAGAAAGTGTGGGAAATGGTGTGTTCACCGAGATCCAATTCGCCACCAGAACTTGCATGTTCGGATATGGGTGTGTTAGAGCAATTACCAAGTGACATATTCATGCAAATTCTGAGGCTTTTGGGTCCAAAAGAAGCTGCAAAGTTGAGCGTTGTTTGCAAGGCTCTGAGATTGCTTGTGTCTGATAATCGTCTCTGGATTCATTTCCTTCAGACCCCACAGGCTGAACCCTCTTGGGATTCTGTCTTCTTTGCTGAGACCAGCTTGAGCTCTGGCCACCCTCTTCCAGCCTTTGTTGGTGAGAGGCCCCAGTTATCGTTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTGCTATTATCATCGATGGCGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCTTGTCCATCGGGGCGATCGGCAACATTTTTGGAATTTGGCAACATCGAGTCTCCAATGTATACTAGACTTCGACATTTTTTTGCTACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTATACCAATATGCCACTATGATGATACTGAATCAGCCAAAGCATCAAGACGACAGCTCAAAGAAGCAATTTATGCTTCCCTTTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCCCTGTATGCTGCGAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAACTTACAGGATTTCTTAAGGAGAAGATGCAAATGAACAACATAAATTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAAGCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACAGAAGCATCATTTGAAGCTGTAGGAGAAGGATTGTTTACACTTTCAAGAGAGAGGTTTCAGACAGCAGAGATCTTATTCAAGCCACATCTTGCTGGAATGCAAGCCATGGGTTTGCACCAGGCCATAGCTCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGCGACAATGATTGGTACAAGACTATAGTTTTATCAGGGGGATCTGCATGTTTACCAGGGTTGGCAGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCATATGTGTCCAATGGAATTAGAGTCATACCCCCTCCATACGGTGCTGATACCCCATGGTTTGGAGCAAAGATTATTGGCAATTTGAGCACCTTTCCTGGTACTTGGTGTGTGACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGA 1392 0.4339 MSKVLKKVWEMVCSPRSNSPPELACSDMGVLEQLPSDIFMQILRLLGPKEAAKLSVVCKALRLLVSDNRLWIHFLQTPQAEPSWDSVFFAETSLSSGHPLPAFVGERPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSIPICHYDDTESAKASRRQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLKEKMQMNNINFQSLYTVRTLKEKLCYVALDYEAELSKDTEASFEAVGEGLFTLSRERFQTAEILFKPHLAGMQAMGLHQAIALCMDHCHSAELAGDNDWYKTIVLSGGSACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIIGNLSTFPGTWCVTKKQFRQKPRLNLIW 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1230g00008 463 PANTHER ACTIN 167 455 IPR004000 -
Gabi1230g00008 463 SMART fbox_2 34 74 IPR001810 GO:0005515
Gabi1230g00008 463 CDD F-box_AtARP8-like 31 74 - -
Gabi1230g00008 463 Gene3D - 230 428 - -
Gabi1230g00008 463 ProSiteProfiles F-box domain profile. 28 74 IPR001810 GO:0005515
Gabi1230g00008 463 Gene3D - 168 455 - -
Gabi1230g00008 463 Pfam F-box domain 32 72 IPR001810 GO:0005515
Gabi1230g00008 463 SUPERFAMILY F-box domain 25 82 IPR036047 GO:0005515
Gabi1230g00008 463 Gene3D - 23 98 - -
Gabi1230g00008 463 SMART actin_3 123 453 IPR004000 -
Gabi1230g00008 463 Pfam Actin 172 453 IPR004000 -
Gabi1230g00008 463 Gene3D Actin; Chain A, domain 4 273 356 - -
Gabi1230g00008 463 SUPERFAMILY Actin-like ATPase domain 124 245 IPR043129 -
Gabi1230g00008 463 SUPERFAMILY Actin-like ATPase domain 239 454 IPR043129 -
Gabi1230g00008 463 CDD NBD_sugar-kinase_HSP70_actin 126 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1230g00008 Gabi-Chr1230 68662 78078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1230g00008 172 455 Cytoskeleton Gene Families AT5G09810 34.471 3.10e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1230g00008 K16616 - gmx:100791973 829.32