Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1230g00007 ATGTCCAAGGTGCTTAAGAAAGTGTGGGAAATGGTGTGTTCACCGAGATCCAATTCGCCACCAGAACTTGCATGTTCGGATATGGGTGTGTTAGAGCAATTACCAAGTGACATATTCATGCAAATTCTGAGGCTTTTGGGTCCAAAAGAAGCTGCAAAGTTGAGCGTTGTTTGCAAGGCTCTGAGATTGCTTGTGTCTGATAATCGTCTCTGGATTCATTTCCTTCAGACCCCACAGGCTGAACCCTCTTGGGATTCTGTCTTCTTTGCTGAGACCAGCTTGAGCTCTGGCCACCCTCTTCCAGCCTTTGTTGGTGAGAGGCCCCAGTTATCGTTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTGCTATTATCATCGATGGCGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCTTGTCCATCGGGGCGATCGGCAACATTTTTGGAATTTGGCAACATCGAGTCTCCAATGTATACTAGACTTCGACATTTTTTTGCTACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTATACCAATATGCCACTATGATGATACTGAATCAGCCAAAGCATCAAGACGACAGCTCAAAGAAGCAATTTATGCTTCCCTTTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCCCTGTATGCTGCGAAACGAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAACTTACAGGATTTCTTAAGGAGAAGATGCAAATGAACAACATAAATTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAAGCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACAGAAGCATCATTTGAAGCTGTAGGAGAAGGATTGTTTACACTTTCAAGAGAGAGGTTTCAGACAGCAGAGATCTTATTCAAGCCACATCTTGCTGGAATGTAG 1065 0.4254 MSKVLKKVWEMVCSPRSNSPPELACSDMGVLEQLPSDIFMQILRLLGPKEAAKLSVVCKALRLLVSDNRLWIHFLQTPQAEPSWDSVFFAETSLSSGHPLPAFVGERPQLSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYACPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSIPICHYDDTESAKASRRQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLKEKMQMNNINFQSLYTVRTLKEKLCYVALDYEAELSKDTEASFEAVGEGLFTLSRERFQTAEILFKPHLAGM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1230g00007 354 SMART fbox_2 34 74 IPR001810 GO:0005515
Gabi1230g00007 354 CDD F-box_AtARP8-like 31 74 - -
Gabi1230g00007 354 ProSiteProfiles F-box domain profile. 28 74 IPR001810 GO:0005515
Gabi1230g00007 354 Pfam F-box domain 32 72 IPR001810 GO:0005515
Gabi1230g00007 354 SUPERFAMILY Actin-like ATPase domain 124 245 IPR043129 -
Gabi1230g00007 354 SUPERFAMILY F-box domain 25 81 IPR036047 GO:0005515
Gabi1230g00007 354 Gene3D - 22 98 - -
Gabi1230g00007 354 Gene3D Actin; Chain A, domain 4 275 353 - -
Gabi1230g00007 354 Gene3D - 121 239 - -
Gabi1230g00007 354 SUPERFAMILY Actin-like ATPase domain 239 353 IPR043129 -
Gabi1230g00007 354 Gene3D - 242 274 - -
Gabi1230g00007 354 PANTHER ACTIN 166 354 IPR004000 -
Gabi1230g00007 354 Pfam Actin 172 353 IPR004000 -
Gabi1230g00007 354 CDD NBD_sugar-kinase_HSP70_actin 126 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1230g00007 Gabi-Chr1230 68654 77161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1230g00007 172 354 Cytoskeleton Gene Families AT3G46520 33.333 5.30e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1230g00007 K16616 - gmx:100791973 610.912