Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi122g00001 ATGATCCTTGCAGTTACTGCAACTACTGAGTCAATTAAAGCACTAGAAATGTTGAGGGAAAACAAAAACAAGTTTGATCTTGCTATTAGTGATGTAATTATGCCACACATGGACGGATTTAAGCTCCTTGAAATTGTGGGACTCGAGATGGACCTACCTATCATCATGCTGTCAGGAGACAGTGATACGAAGCAAGTGATGAAAGGTGTTACACATGGTGCATGTGACTATTTAATTAAACCTCCTAAAATTGAAGTTTTGCAAAACATATGGCAACATGTACTGCGAAAGAAGATTGACTGCAAGGTTTGGAATGTTGAGTTGCATAAAAAGTTTGTTGATGCAGTTAATCAACTAGGCATTGACAAGGCTATTCCTATGAAAATACTTGATTCGATGAACGTTGAAGGAATTACAAGAGAACATGTAGCAAGCCATCTGCAGAAATACAGGTTGGCCCTCAAGAAGGCAACTCATCAAGGTAGCATGGTTGATGGATTGGGTTGCAGTAACCCTTATGTGCAAATGAGTTCAATAAATAGACATGAAAATTTTAACACTTTGTCTGGATCAGGAAGAATCTTAACAACTACACCACAACATTCATATAAATCTGGTGGAATGTTTGGTAGGCTGAACTGCCCAACAGGCTTTAATTTGAGAGGAATGGGTTCCTCTGAACTGGCCGGGCCTATTCGGTCGCATTATATTAACAGATCCATAAAATCACTAGGAAACATTCAGCTGCCTAAGTTTGCTGCAAATCAAAGCTCTAGTTTATCGCAAGGCATTCCAAAATCAATTGAGCTTAATCAATTTCAGAAGAGCAACAATATTGTGCAGTTTAATCCAATTGGTGGGTCAACTGAATTTACTGATTCCTCTACTGGAAAGTAG 897 0.3868 MILAVTATTESIKALEMLRENKNKFDLAISDVIMPHMDGFKLLEIVGLEMDLPIIMLSGDSDTKQVMKGVTHGACDYLIKPPKIEVLQNIWQHVLRKKIDCKVWNVELHKKFVDAVNQLGIDKAIPMKILDSMNVEGITREHVASHLQKYRLALKKATHQGSMVDGLGCSNPYVQMSSINRHENFNTLSGSGRILTTTPQHSYKSGGMFGRLNCPTGFNLRGMGSSELAGPIRSHYINRSIKSLGNIQLPKFAANQSSSLSQGIPKSIELNQFQKSNNIVQFNPIGGSTEFTDSSTGK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi122g00001 298 Gene3D - 3 99 - -
Gabi122g00001 298 CDD REC_typeB_ARR-like 5 95 - -
Gabi122g00001 298 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 206 IPR045279 GO:0009736
Gabi122g00001 298 SMART REC_2 1 91 IPR001789 GO:0000160
Gabi122g00001 298 FunFam Two-component response regulator 95 158 - -
Gabi122g00001 298 SUPERFAMILY CheY-like 5 99 IPR011006 -
Gabi122g00001 298 Pfam Myb-like DNA-binding domain 103 151 IPR001005 -
Gabi122g00001 298 Pfam Response regulator receiver domain 5 89 IPR001789 GO:0000160
Gabi122g00001 298 Gene3D - 100 157 - -
Gabi122g00001 298 ProSiteProfiles Response regulatory domain profile. 1 95 IPR001789 GO:0000160
Gabi122g00001 298 SUPERFAMILY Homeodomain-like 103 156 IPR009057 -
Gabi122g00001 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 152 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi122g00001 Gabi-Chr122 92952 94951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi122g00001 5 278 Response Regulator Gene Family AT2G25180 43.323 1.23e-72 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi122g00001 Response_reg 4.2e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi122g00001 - K14491 mtr:11440093 281.567