Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1229g00001 GAGCTAGCATTGATGTTAAATTTCTTGCAATTTGAATTCTTAGTTGTTACCGTTGTCAACTATTGGCCAGAAAAGGGAATATCTGGATTTATAGTATATAAATTTCGACTTAGGAGACTTGAAGGGAAGTCTACATTAACCACTAATCAGCTTTGGAAGGAAGGTTTCACATATTATAAGTCCGTCAAGGTTGCAAATAATGTGACGGTTCCCAAAAATGCTACTGGGTGCAAATGCAAAGGCTTTTGTATTGATCCGAAAACTTGTGAATGTGCGTTGCTTAATGGCTCAGATTTTCCCTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCCAAAGATGTAGTTTTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTAGATATCGTTTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCCGTTAGAACTTGGGATTTTATACCTTCTGGAGCCCCAGTTTGTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGAAAGTGTATTGGAAAACAATTATATTTTTGACATAGATTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCAAATAATGTAGCAGTTCCTGCAAATCTTTTGGACAAATGCGATGACCAAGGTTCTGAAAGTGTGCCGGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGCGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAAATTGGCTCGAGTAGTGTTGTTTTCTTCCGACAATATATCCCCTTTGCAGGAGCTGACATATGACTATGGCTATGCGCTTGATAGTGTCTTTGACTCCAATGGGAAGATAAAGCAAATGCCATGCTACTGTGGAGCCCCAGGCTGCAGGAAGCGATTGTTCTAA 960 0.4115 ELALMLNFLQFEFLVVTVVNYWPEKGISGFIVYKFRLRRLEGKSTLTTNQLWKEGFTYYKSVKVANNVTVPKNATGCKCKGFCIDPKTCECALLNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRTWDFIPSGAPVCEYTGILARTEDMESVLENNYIFDIDCLQTIKGLGGRERRSNNVAVPANLLDKCDDQGSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKLARVVLFSSDNISPLQELTYDYGYALDSVFDSNGKIKQMPCYCGAPGCRKRLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1229g00001 319 ProSiteProfiles Post-SET domain profile. 303 319 IPR003616 -
Gabi1229g00001 319 Pfam Pre-SET motif 51 132 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1229g00001 319 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 311 - -
Gabi1229g00001 319 SMART set_7 140 295 IPR001214 GO:0005515
Gabi1229g00001 319 SUPERFAMILY SET domain 53 316 IPR046341 -
Gabi1229g00001 319 SUPERFAMILY PUA domain-like 17 54 IPR015947 -
Gabi1229g00001 319 Gene3D SET domain 48 319 IPR046341 -
Gabi1229g00001 319 Gene3D - 15 47 IPR036987 -
Gabi1229g00001 319 Pfam SET domain 151 289 IPR001214 GO:0005515
Gabi1229g00001 319 ProSiteProfiles SET domain profile. 140 289 IPR001214 GO:0005515
Gabi1229g00001 319 SMART PostSET_3 303 319 IPR003616 -
Gabi1229g00001 319 ProSiteProfiles Pre-SET domain profile. 75 137 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1229g00001 319 SMART preset_2 36 124 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1229g00001 Gabi-Chr1229 17602 21083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1229g00001 18 319 EF-hand Containing Proteins AT5G13960 56.196 6.95e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1229g00001 SET 8.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1229g00001 K11420 - gmx:100796701 513.072