Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1227g00013 ATGGGGGACGGGGACATTGAAGGCGGTGGAGAGGACGGTTTTCACTCACCGATTGGTCGTAAGTATCGCCCTGTGTTGGCAAACGATCGTGCGGTGCTCGAGATGTCTTCCATGGATCCTGGATCTTCTTCTTCTTCTTCGTTTCCAGATCAGCCTCCTAATCTTAGAAAAATAAATGTGACTGCGAGTGCGAATGAGAGTTCGGATGCTAAAGGAGGGAACTCTCCTCGTCAGCTACAACCTAATGGATCCCAGCAGGAATCCAAACTGGAATTGTTCGGTTTTGATTCTCTTGTCAACATTCTTGGTCTCAAAAGCATGACCGGTGAGCAAGTTGCCCCACCATCTAGTCCTAGAGAAGGTGAGGATATTTCCATCACAGTTGGGCAGCCAAAGCCGGCTGCTCCCAAACTGGGTACAATGATGGGTGTATTCATTCCATGTATACAAAGCATTTTGGGCATCATCTACTTCATTCGTTTCTCTTGGATTGTTGGTATGGCTGGCATAGGAGAGACATTGGTGCTAGTTGCTTTATGTGGCACTTGTACTTTCCTTACCTCAATATCGTTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGGGGACCATACTATCTCATAGGTCGTGCCCTTGGTCCAGAAGTTGGAGTTAGCATTGGTCTATGCTTCTTCCTTGGAAATGCAGTTGCTGGAGCACTTTATGTATTGGGAGCTGTAGAGACGTTTTTGAAAGCTGTTCCTTCTGCTGGGATTTTCAGAGAGACTATCACACAAGTTAATGGTACTGCAGTTGCGCAACCAATAGAGAGTCCAAGTTCTCATGACCTGCAAATTTATGGGATTGTTGTGACGATTGTTTTATGCTTTGTTGTATTTGGAGGAGTAAAGATGATAAATCGGGTTGCACCTGCTTTTCTCATACCTGTTTTATTCTCACTCATCTGCATATTTTTGGGAATTTTTGTGGCAAGAAAGGATCATCCTACAGAGGGAATTACTGGGTTGAGTTTGGAGACGATGAAAGAAAATTGGAGTTCAGATTATCAAAAGACTAACGATGCTGGAATTCCAGAAACTGATGGCTCTGTAAGCTGGAATTTCAATTCATTGGTAGGGCTCTTTTTCCCAGCTGTGACGGGAATAATGGCAGGTTCTAATCGATCATCCTCTTTGAAAGATACTCAGCGATCAATTCCTGTTGGAACACTAGCTGCAACTCTTGTAACTTCTTCTTTGTATCTTATTTCTGTGATAATGCTTGGCGCTGTTGCCAGCAGAGAGAAGCTTTTAACTGACAGGCTACTTACAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATCGGGATTATTCTTTCAACTATGGGTGCTGCACTTCAGAGCCTGACTGGTGCCCCACGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCTATTTTGAACTACTTTAAAGTTGCAGATGGCAGTGAGCCACATGTGGCTACCCTTTTTACCGCATTCCTATGTATCGGGTGTGTCGTTATTGGGAATCTGGACCTTATCACTCCAACTGTAACCATGTTTTTTCTTTTATGTTATTCTGGGGTCAACTTATCCTGCTTCCTTCTCGATCTTCTAGATGCCCCCAGTTGGCGTCCCCGGTGGAAATTTCACCATTGGAGTATGTCGCTTATTGGAGCATTACTTTGCATAGTGATCATGTTCCTAATCTCCTGGTCATTCACTGTGGTGTCCTTGGCCCTTGCAAGCCTTATATACAAGTACGTGAGCATCAAAGGAAAGGCTGGGGACTGGGGAGATGGTTTCAAAAGTGCTTATTTCCAACTTGCACTTCGCAGCCTTCGGTCGCTAGGAGCAAGCCAAGTGCACCCAAAGAATTGGTATCCAATTCCACTGGTATTTTGCCGACCCTGGGGCAAACTGCCGGAAAATGTTCCCTGTCATCCCAAACTCGCAGATTTCGCCAACTGTATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATACTAGATGGGGATTACCATGAATGTGCTGAAGATGCCAAGGCTTCTTGTAAACAACTTAGTACCTACATTGATTACAAGAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCGAACATGTCTGAAGGCTTTCGTGGCATCATTCAGACAATGGGCCTTGGCAATCTCAAGCCTAACATTGTGGTGATGCGTTACCCAGAAATCTGGCGTCGGGAGAATTTAACGGAAATCCCCGCCACCTTTGTTGGGATAATTAATGACTGCATTGTTGCAAACAAGGCAGTAGTTATAGTGAAGGGTCTTGATGAATGGCCTAATGAGTACCAGAAGCAGTATGGTACAATTGATTTGTATTGGATTGTGAGAGATGGTGGTCTCATGCTCCTCCTCTCTCAACTGCTGCTTACCAAGGACAGCTTTGAGAGTTGCAAGATTCAGGTCTTCTGTCTCGCAGAAGATGATGCAGATGCAGAGGGGCTGAAAGCTGATGTGAAAAAATTCCTTTATGATCTTCGGATGCAAGCGGAAGTCTTTGTCATAACAATGATGGGGGATGCACAAATGGACGGTGGTTCTCCGCAAGATGAGTCATTAGAAGCATTTACTAGTGCCCAACAAAGAATTGCTGATTATTTAACCCAAATGAAGTCAGAAGCAGAGAAAGAAGGTACTCCTCTAATGGCTGATGGTAAGCCTGTGGTTGTGAACGAGAAGCAGGTTGAGAAGTTTCTTGACACAACGCTTAAGCTTAATTCAACAATTTTGAGATACTCAAGAATGGCTGCTGTTGTTTTGGTTAGTCTTCCCCCACCTCCAGTGAGCCACCCAGCATATTTCTATATGGAGTACATGGATCTGTTGCTTGAGAATGTTCCAAGGATTTTGATCGTAAGAGGATATCGTAGAGACGTTGTAACTCTGTTCACATAG 2955 0.4433 MGDGDIEGGGEDGFHSPIGRKYRPVLANDRAVLEMSSMDPGSSSSSSFPDQPPNLRKINVTASANESSDAKGGNSPRQLQPNGSQQESKLELFGFDSLVNILGLKSMTGEQVAPPSSPREGEDISITVGQPKPAAPKLGTMMGVFIPCIQSILGIIYFIRFSWIVGMAGIGETLVLVALCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPSAGIFRETITQVNGTAVAQPIESPSSHDLQIYGIVVTIVLCFVVFGGVKMINRVAPAFLIPVLFSLICIFLGIFVARKDHPTEGITGLSLETMKENWSSDYQKTNDAGIPETDGSVSWNFNSLVGLFFPAVTGIMAGSNRSSSLKDTQRSIPVGTLAATLVTSSLYLISVIMLGAVASREKLLTDRLLTATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCIGCVVIGNLDLITPTVTMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSMSLIGALLCIVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKASCKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFESCKIQVFCLAEDDADAEGLKADVKKFLYDLRMQAEVFVITMMGDAQMDGGSPQDESLEAFTSAQQRIADYLTQMKSEAEKEGTPLMADGKPVVVNEKQVEKFLDTTLKLNSTILRYSRMAAVVLVSLPPPPVSHPAYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1227g00013 984 Gene3D Amino acid/polyamine transporter I 136 601 - -
Gabi1227g00013 984 FunFam Cation-chloride cotransporter 1 137 601 - -
Gabi1227g00013 984 MobiDBLite consensus disorder prediction 1 86 - -
Gabi1227g00013 984 NCBIfam K-Cl cotransporter 80 984 IPR004842 GO:0006811|GO:0015377|GO:0016020
Gabi1227g00013 984 Pfam Amino acid permease 143 619 IPR004841 GO:0016020|GO:0055085
Gabi1227g00013 984 Pfam Solute carrier family 12 653 774 IPR018491 GO:0006811|GO:0016020|GO:0022857
Gabi1227g00013 984 Pfam Solute carrier family 12 785 983 IPR018491 GO:0006811|GO:0016020|GO:0022857
Gabi1227g00013 984 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 88 981 IPR004842 GO:0006811|GO:0015377|GO:0016020
Gabi1227g00013 984 MobiDBLite consensus disorder prediction 37 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1227g00013 Gabi-Chr1227 146219 173563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1227g00013 138 984 Inorganic Solute Cotransporters AT1G30450 83.353 0.0 1461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1227g00013 K14427 - gmx:100795205 1733.77