Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1227g00005 ATGGCTTCCCAAAACCCAGCGGAGGAAGAAGACAACTCAAATCGGAAGTGGTCCCTCGCAGACTTCGAGATCGGTAAACCCCTCGGCAAAGGCAAATTCGGCAGGGTCTACGTCGCCAGAGAGATCAAGAGCAAATATATTGTGGCATTGAAGGTTATTTTTAAGCAACAAATTGAAAAGTACAGAATTCAACATCAACTAAGGAGAGAGATGGAGATACAATCCGCTCTTCGCCACCCGAACATCCTGCGACTCTATGGTTGGTTTCATGACGATGAGCGTGTTTTCTTGATTCTTGAATATGCTCATAACGGTGAGCTTTACAAGGAGCTAAGAAAAAAAGGTCATCTCACTGAGAAGCAGGCTGCCACGTATATTTTGAGCCTCACAAAGGCATTAGCTTATTGTCATGAGAAGCATGTTATTCATAGGGATATCAAGCCCGAAAATTTGTTACTTGACCATGAGGGTCGTCTTAAAATTGCCGACTTTGGTTGGTCTGTACAGTCTAGTAGCAAAAGACATACCATGTGTGGAACATTGGATTATTTAGCACCAGAAATGGTTGAAAACAGAGCTCATGACTATGCGGTTGATAACTGGACTCTCGGTATCCTTTGTTATGAGTTCCTCTATGGTTCTCCTCCATTTGAGGCTGAGAGTCAAGCAGATACCTTCAAAAGGATAATGAAGGTTGACCTAAGCTTCCCTTCCTCCCCTGCCGTTTCTTCAGATGCCAAAAATCTTATTAGTCGGCTCCTGGTGAAAGACTCCTCAAGACGGCTCTCTCTTCAGAAGATAAGGGAGCATCCTTGGATAATCAAGAATGCAAATCCTATGGGTATCCGCAAGTAG 855 0.4386 MASQNPAEEEDNSNRKWSLADFEIGKPLGKGKFGRVYVAREIKSKYIVALKVIFKQQIEKYRIQHQLRREMEIQSALRHPNILRLYGWFHDDERVFLILEYAHNGELYKELRKKGHLTEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSSSKRHTMCGTLDYLAPEMVENRAHDYAVDNWTLGILCYEFLYGSPPFEAESQADTFKRIMKVDLSFPSSPAVSSDAKNLISRLLVKDSSRRLSLQKIREHPWIIKNANPMGIRK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1227g00005 284 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 4 280 IPR030616 GO:0004672
Gabi1227g00005 284 Gene3D Transferase(Phosphotransferase) domain 1 106 282 - -
Gabi1227g00005 284 SMART serkin_6 22 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1227g00005 284 FunFam Aurora kinase A 14 105 - -
Gabi1227g00005 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Gabi1227g00005 284 SUPERFAMILY Protein kinase-like (PK-like) 15 277 IPR011009 -
Gabi1227g00005 284 CDD STKc_Aurora 21 273 - -
Gabi1227g00005 284 ProSitePatterns Protein kinases ATP-binding region signature. 28 55 IPR017441 GO:0005524
Gabi1227g00005 284 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
Gabi1227g00005 284 Pfam Protein kinase domain 22 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1227g00005 284 ProSiteProfiles Protein kinase domain profile. 22 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1227g00005 284 PIRSF ILK 1 272 - -
Gabi1227g00005 284 FunFam Serine/threonine-protein kinase ark1 14 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1227g00005 Gabi-Chr1227 58785 63705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1227g00005 6 278 CBL-interacting serine-threonine protein kinases AT5G25110 39.068 4.35e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Gabi1227g00005 Pkinase 4.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1227g00005 K08850 - gmx:100800111 519.235