Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1226g00001 GTTTCGTCCGGCGACACTCTGTACACGTCAGCTACCACCTTCGAAGAACTGAATCTCTCACCGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCATAAACCTAGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGGTCGCACACGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCCTAATCTGTTCAAGCTTTAAGCTATCTTACCAAAATACTGAAGTTCTCCGAAAGATGGGAAAGTACATGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGTGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGGCTTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTCAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAAGTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTGAATGACATTGTCCAGAATTTTGTTTCGAGGACAGTCAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAATGAAAAAAGATTACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTCAAGAAATAG 894 0.4083 VSSGDTLYTSATTFEELNLSPELLKGLYVEMKFHKPSKIQAVTLPMILNPPNRDLVAHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFLICSSFKLSYQNTEVLRKMGKYMGISSECAIPADSSDALPIAKRAPIMAQVVIGTPGTINKWMAYKKLGVTRLKILVFDEADQMLAQDGFKDDSLRIMKGIEKVNSNCQVLLFSATLNDIVQNFVSRTVKQDYNTLFVKELSLDAVKQYKVHCPDELSKIEMKKDYILEIGENLGQTIIFVRTRNSAKMLHKSLVEIGENLGQTIIFVKK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1226g00001 297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 222 IPR014001 -
Gabi1226g00001 297 Gene3D - 3 226 IPR027417 -
Gabi1226g00001 297 PANTHER RNA HELICASE 10 281 - -
Gabi1226g00001 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 217 IPR027417 -
Gabi1226g00001 297 Pfam DEAD/DEAH box helicase 38 209 IPR011545 GO:0003676|GO:0005524
Gabi1226g00001 297 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 12 41 IPR014014 GO:0003724
Gabi1226g00001 297 SMART ultradead3 32 236 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1226g00001 Gabi-Chr1226 97 4420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1226g00001 5 277 Eukaryotic Initiation Factors Gene Family AT1G72730 30.877 2.61e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1226g00001 K18655 - qsa:O6P43_010208 444.891