Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1225g00027 ATGGCAGCTCGCAGAATTTCCTGGCTGCTTTCTCGCTCTCTATCTGCTTCTTTGCTTCATTCACTAGGTGCTCAACCGTGGTGGAGAAACATTAACAGATTTAGCACGGCTGCAGCAGTTGAGGAATTAATCACTCCACAGGTTCAAATAAGTTATACACATAATCTGATAAATGGGCAATTTGTGGATGCTGCATCAGGGAAAACATTTCCAACATATGACCCGCGCACCGGAGAAGTGCTTGCACATGTTGCTGAAAGCGAAGCTGAAGATATCAACCGTGCAGTATCAGCAGCTCGCAAGGCCTTTGATGAAGGACCTTGGCCAAAAATGACTGCTTATGAAAGAAGTCGGATAATGCTGCGCTTTGCTGATTTAGTTGAGAAGCACAACGATGAGCTTGCAGCTCTGGAGACATGGAACAATGGAAAGCCTTATGAACAGGCTGCCAAGACTGAATTACCAATGTTTGTGCGTTTATTTCACTATTATGCTGGCTGGGCAGATAAAATTCATGGGCTGACAGTCCCAGCTGATGGCAATTATCACCTCCAGACATTGCATGAACCAATTGGAGTTGCAGGACAAATTATACCTTGGAACTTTCCTCTACTTATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCATGTGGCAATACCATTGTCCTGAAGACAGCTGAGCAAACGCCACTGACTGCTCTCTATGTGGCAAAACTATTTCATGAGGCTGGCCTTCCCCCAGGTGTTCTGAATATAGTTAATGGGTATGGTCCAACTGCTGGTGCACCTCTTGCAAGTCATATGGATGTGGACAAGCTAGCATTCACTGGGTCAACAGATACTGGAAAAATTGTACTTGAATTGGCTGCAAGAAGCAATCTTAAGCCAGTGACATTGGAGCTTGGAGGGAAATCACCTTTCATAATATGTGAGGATGCTGATGTTGACAAGGCTGTTGAAGCTGCACACTTTGCTCTATTCTTTAATCAGGGGCAATGTTGCTGTGCCGGGTCTCGTACCTTTGTGCATGAGCGTATCTATGACGAGTTCTTGGAGAAATCAAAGAAACGGGCTTTGAGACGTGTAGTTGGTGATCCATTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGACGTGGAACAATTTGAGAAAGTCCTTAGGTACATTAGGTCTGGAATTGAAAGCAATGCTACCCTTGAATGTGGGGGTGGGAGATTGGGCTCAAAAGGCTTCTTTGTGGAGCCAACTGTCTTCTCAAATGTTCAGGATAATATGCTGATAGCACAAGATGAAATCTTTGGCCCGGTACAGTCCATCTTGAAATTCAAGGACATTAATGAAGTAATACGACGGGCAAATGCAACACGTTATGGTCTAGCCGCAGGTGTGTTCACTAAGAACGTGAGCACAGCCAACACTTTGATGAGGGCACTGAGAGCAGGAACAGTGTGGATTAATTGCTTCGATGTTTTTGATGCTGCAATTCCTTTTGGTGGGTACAAGATGAGCGGCATAGGCAGGGAGAAAGGAATCTACAGTCTTCACAACTACCTTCAGGTGAAAGCTGTTGTCTCACCAGTCAACAATCCTGCATGGCTGTAA 1602 0.4507 MAARRISWLLSRSLSASLLHSLGAQPWWRNINRFSTAAAVEELITPQVQISYTHNLINGQFVDAASGKTFPTYDPRTGEVLAHVAESEAEDINRAVSAARKAFDEGPWPKMTAYERSRIMLRFADLVEKHNDELAALETWNNGKPYEQAAKTELPMFVRLFHYYAGWADKIHGLTVPADGNYHLQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPPGVLNIVNGYGPTAGAPLASHMDVDKLAFTGSTDTGKIVLELAARSNLKPVTLELGGKSPFIICEDADVDKAVEAAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKKRALRRVVGDPFKKGVEQGPQIDVEQFEKVLRYIRSGIESNATLECGGGRLGSKGFFVEPTVFSNVQDNMLIAQDEIFGPVQSILKFKDINEVIRRANATRYGLAAGVFTKNVSTANTLMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVSPVNNPAWL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1225g00027 533 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 327 338 IPR016160 GO:0016491
Gabi1225g00027 533 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 38 523 - -
Gabi1225g00027 533 FunFam Mitochondrial aldehyde dehydrogenase 2 305 494 - -
Gabi1225g00027 533 Pfam Aldehyde dehydrogenase family 61 523 IPR015590 GO:0016491
Gabi1225g00027 533 CDD ALDH_F2BC 50 524 - -
Gabi1225g00027 533 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 299 306 IPR029510 GO:0016491
Gabi1225g00027 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Gabi1225g00027 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 67 523 IPR016162 GO:0016491
Gabi1225g00027 533 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 57 311 - -
Gabi1225g00027 533 FunFam Aldehyde dehydrogenase, putative 495 521 - -
Gabi1225g00027 533 SUPERFAMILY ALDH-like 48 527 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1225g00027 Gabi-Chr1225 207745 211853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1225g00027 1 533 Aldehyde Dehydrogenase Gene Family AT3G48000 78.810 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1225g00027 K00128 - qsa:O6P43_030889 946.421