Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1225g00021 ATGACTCATATTCCCAATTACAGAGATCGCCGGATTCTAACATTTCCGGCGGTTCATCCTTGCGAAGGTATATCTTCCGTTACCCTTCTTGCTTCTCTCATCACTCTCTCGCAGAATATATGCAATTTCCAACACGAATCGTTCACCACCCAACGACGAAATGCAAGAGAAACAATGCGCCAAATTGGCGTTCTTCTTATATTCCTCCACGAAATTCGAGAACGTGGCTTGGTTATCCCTGACTCCATTCTCCTCTGTTTCTCAGAGCTCCACTTCACCTTCCAAAAGATTCACTTCTTGATACAAGATTGTACTCTCGAAGGTGCTCGCTTATTCATGCTCACCAAATCCCAATACGTTGCAACTCAGTTCCGCTCTCTTATTCGCGCCATGGCCACCGCCCTTGACGTTTTGCCTCTGCAAAGTTTCGAGGTTTGTAGCGAAGTGAAGGAGTTAGTTGAGTTAGTAGCCAAGCAAGCGAGGAAAGCCAAGTTCGAAATCGACCCCAAAGACGAAATCGCAAGCAAAAGAGTTCATTCTATTCTGCGCCAATTCGAGAGGGGAACCGAACCGGACGTGAGTTCCATGCAGGGAATCATGAACTACCTCGAAATCAAAACCTGGAAGGATTGTAACAAAGAGATTAAATTCTTAGAAGACGAGATCAGCTTCAGGTGTTGTGATTGTGACGAGCGAGAGGTTCCACTCTTGAGTAGCTTGGTTGGGTTCTTATGCTATTGTAGGGCAGTGATATTCGAAACTCTAGATAACCAATCCGAAGCCAGGTTCAGCACAGAGATGATGATAACCTACGTGAACCCAGAGGATTTCCGTTGCCCGATTTCCCTTGAGTTGATGACTGAACCGGTGACCGTTTCAACGGGTCAAACCTATGACCGAGCCTCCATTCAGAAATGGCTTAAAGCTGGAAACATGATATGTCCCAAAACAGGTGAGAAGCTAAAAAACACAGAGTTGGTCCCAAACACAACGCTAAAGAGGCTCATCCAACAGTTCTGCGCTGACAACGACATTTCCCTCGCCAAGTCATGTAACCGTAACCGTGACATAACGAGAACAATCGTTCCAGGTAGTTCAGCGGCAGCACATGCCATGCAATTCCTCTCGTGGTTTCTCACGCGGAGGCTTGTGTTCGGAACCCAAGAACAGAAAAACAAGGCTGCTTATGAGATTCGCGTGCTTGCAAGGTCCAGCATTTTCAACCGCACGTGCTTGGTTGAAGTTGGCACGGTGCCTCCTCTGCTTGGTCTTTTGACCACAAATGATAAATCCACGCAAGAGAATGCAATCTCTTCTCTGTTGAAGCTCTCCAAGCATGCCAGTGGCTCTCAAAGCATCATGGATAGCGGTGGTTTAGAACCCATTCTTTTGGTGCTCAAAAAAGGGCTTAGCCTTGAAGCTCGCCAAATCGCAGCTGCTACAATTTTTTATCTTTCTTCGGTGAAAGAATACAGGAAATTAATCGGAGAAAACCCAGTGGCGATTCCGGGTTTAGTAGAGTTGGTCAAGGAAGGAACAACATGTGGGAAAAAGAATGCTGTGGTTGCAATTTTTGGTTTGCTTTTGCTTCCTAGGAATCATCGAAGGGTGCTTGAGGCAGGTGCTGTTCCTGCGCTCGTTGATATTTTGGCTTCCTCCTCGAACAACAATGAACTCATCGCTGAATGTTTAGCTGTTCTTGCAGCCTTGGCTGAGAATGTTGTGGATGGAGCACATGCTATCTTACAAGCCTCCGCGTTGTCGTTAATCATTGGGATGTTGCGATCTGCCACGTCGCGTGCAGGGAAAGAACACTCTGCTTCAATCTTGTTGTCACTTTGCGTCAATGTTGGTGTTGAGGTAGTAGCTGTTCTTGCCAAGGACCCCTCGCTGATGCCTTCGCTTTATTCACTTCTTACCGATGGTACTTCTCATGCCGCCAAAAAAGCACGTTTTCTCATCAAAGTTCTACAAGATTTCAATGAAACAACAATTTCTGGATTGAAGGGTTCCTCAATTCCACAGGAACGATCCCTTCACGTTTGGTGA 2049 0.4632 MTHIPNYRDRRILTFPAVHPCEGISSVTLLASLITLSQNICNFQHESFTTQRRNARETMRQIGVLLIFLHEIRERGLVIPDSILLCFSELHFTFQKIHFLIQDCTLEGARLFMLTKSQYVATQFRSLIRAMATALDVLPLQSFEVCSEVKELVELVAKQARKAKFEIDPKDEIASKRVHSILRQFERGTEPDVSSMQGIMNYLEIKTWKDCNKEIKFLEDEISFRCCDCDEREVPLLSSLVGFLCYCRAVIFETLDNQSEARFSTEMMITYVNPEDFRCPISLELMTEPVTVSTGQTYDRASIQKWLKAGNMICPKTGEKLKNTELVPNTTLKRLIQQFCADNDISLAKSCNRNRDITRTIVPGSSAAAHAMQFLSWFLTRRLVFGTQEQKNKAAYEIRVLARSSIFNRTCLVEVGTVPPLLGLLTTNDKSTQENAISSLLKLSKHASGSQSIMDSGGLEPILLVLKKGLSLEARQIAAATIFYLSSVKEYRKLIGENPVAIPGLVELVKEGTTCGKKNAVVAIFGLLLLPRNHRRVLEAGAVPALVDILASSSNNNELIAECLAVLAALAENVVDGAHAILQASALSLIIGMLRSATSRAGKEHSASILLSLCVNVGVEVVAVLAKDPSLMPSLYSLLTDGTSHAAKKARFLIKVLQDFNETTISGLKGSSIPQERSLHVW 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1225g00021 682 Pfam Armadillo/beta-catenin-like repeat 408 441 IPR000225 GO:0005515
Gabi1225g00021 682 FunFam RING-type E3 ubiquitin transferase 273 345 - -
Gabi1225g00021 682 Gene3D - 347 667 IPR011989 -
Gabi1225g00021 682 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Gabi1225g00021 682 SUPERFAMILY RING/U-box 273 346 - -
Gabi1225g00021 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 571 IPR000225 GO:0005515
Gabi1225g00021 682 SUPERFAMILY ARM repeat 385 657 IPR016024 -
Gabi1225g00021 682 PANTHER U BOX DOMAIN-CONTAINING 79 657 - -
Gabi1225g00021 682 FunFam RING-type E3 ubiquitin transferase 353 668 - -
Gabi1225g00021 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 346 IPR013083 -
Gabi1225g00021 682 CDD RING-Ubox_PUB 274 326 IPR045210 -
Gabi1225g00021 682 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Gabi1225g00021 682 SMART arm_5 446 487 IPR000225 GO:0005515
Gabi1225g00021 682 SMART arm_5 404 445 IPR000225 GO:0005515
Gabi1225g00021 682 SMART arm_5 530 572 IPR000225 GO:0005515
Gabi1225g00021 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Gabi1225g00021 682 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1225g00021 Gabi-Chr1225 184898 187989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1225g00021 1 682 U-box Gene Family AT1G60190 41.007 3.48e-175 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1225g00021 - - gmx:100787869 938.332