Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1225g00020 ATGACTCATATTCCCAATTACAGAGATCGCCGGATTCTAACATTTCCGGCGGTTCATCCTTGCGAAGGTATATCTTCCGTTACCCTTCTTGCTTCTCTCATCACTCTCTCGCAGAATATATGCAATTTCCAACACGAATCGTTCACCACCCAACGACGAAATGCAAGAGAAACAATGCGCCAAATTGGCGTTCTTCTTATATTCCTCCACGAAATTCGAGAACGTGGCTTGGTTATCCCTGACTCCATTCTCCTCTGTTTCTCAGAGCTCCACTTCACCTTCCAAAAGATTCACTTCTTGATACAAGATTGTACTCTCGAAGGTGCTCGCTTATTCATGCTCACCAAATCCCAATACGTTGCAACTCAGTTCCGCTCTCTTATTCGCGCCATGGCCACCGCCCTTGACGTTTTGCCTCTGCAAAGTTTCGAGGTTTGTAGCGAAGTGAAGGAGTTAGTTGAGTTAGTAGCCAAGCAAGCGAGGAAAGCCAAGTTCGAAATCGACCCCAAAGACGAAATCGCAAGCAAAAGAGTTCATTCTATTCTGCGCCAATTCGAGAGGGGAACCGAACCGGACGTGAGTTCCATGCAGGGAATCATGAACTACCTCGAAATCAAAACCTGGAAGGATTGTAACAAAGAGATTAAATTCTTAGAAGACGAGATCAGCTTCAGGTGTTGTGATTGTGACGAGCGAGAGGTTCCACTCTTGAGTAGCTTGGTTGGGTTCTTATGCTATTGTAGGGCAGTGATATTCGAAACTCTAGATAACCAATCCGAAGCCAGGTTCAGCACAGAGATGATGATAACCTACGTGAACCCAGAGGATTTCCGTTGCCCGATTTCCCTTGAGTTGATGACTGAACCGGTGACCGTTTCAACGGGTCAAACCTATGACCGAGCCTCCATTCAGAAATGGCTTAAAGCTGGAAACATGATATGTCCCAAAACAGGTGAGAAGCTAAAAAACACAGAGTTGGTCCCAAACACAACGCTAAAGAGGCTCATCCAACAGTTCTGCGCTGACAACGACATTTCCCTCGCCAAGTCATGTAACCGTAACCGTGACATAACGAGAACAATCGTTCCAGGTAGTTCAGCGGCAGCACATGCCATGCAATTCCTCTCGTGGTTTCTCACGCGGAGGCTTGTGTTCGGAACCCAAGAACAGAAAAACAAGGCTGCTTATGAGATTCGCGTGCTTGCAAGGTCCAGCATTTTCAACCGCACGTGCTTGGTTGAAGTTGGCACGGTGCCTCCTCTGCTTGGTCTTTTGACCACAAATGATAAATCCACGCAAGAGAATGCAATCTCTTCTCTGTTGAAGCTCTCCAAGCATGCCAGTGGCTCTCAAAGCATCATGGATAGCGGTGGTTTAGAACCCATTCTTTTGGTGCTCAAAAAAGGGCTTAGCCTTGAAGCTCGCCAAATCGCAGCTGCTACAATTTTTTATCTTTCTTCGGTGAAAGAATACAGGAAATTAATCGGAGAAAACCCAGTGGCGATTCCGGGTTTAGTAGAGTTGGTCAAGGAAGGAACAACATGTGGGAAAAAGAATGCTGTGGTTGCAATTTTTGGTTTGCTTTTGCTTCCTAGGAATCATCGAAGGGTGCTTGAGGCAGCCTTGGCTGAGAATGTTGTGGATGGAGCACATGCTATCTTACAAGCCTCCGCGTTGTCGTTAATCATTGGGATGTTGCGATCTGCCACGTCGCGTGCAGGGAAAGAACACTCTGCTTCAATCTTGTTGTCACTTTGCGTCAATGTTGGTGTTGAGGTAGTAGCTGTTCTTGCCAAGGACCCCTCGCTGATGCCTTCGCTTTATTCACTTCTTACCGATGGTACTTCTCATGCCGCCAAAAAAGCACGTTTTCTCATCAAAGTTCTACAAGATTTCAATGAAACAACAATTTCTGGATTGAAGGGTTCCTCAATTCCACAGGAACGATCCCTTCACGTTTGGTGA 1965 0.4631 MTHIPNYRDRRILTFPAVHPCEGISSVTLLASLITLSQNICNFQHESFTTQRRNARETMRQIGVLLIFLHEIRERGLVIPDSILLCFSELHFTFQKIHFLIQDCTLEGARLFMLTKSQYVATQFRSLIRAMATALDVLPLQSFEVCSEVKELVELVAKQARKAKFEIDPKDEIASKRVHSILRQFERGTEPDVSSMQGIMNYLEIKTWKDCNKEIKFLEDEISFRCCDCDEREVPLLSSLVGFLCYCRAVIFETLDNQSEARFSTEMMITYVNPEDFRCPISLELMTEPVTVSTGQTYDRASIQKWLKAGNMICPKTGEKLKNTELVPNTTLKRLIQQFCADNDISLAKSCNRNRDITRTIVPGSSAAAHAMQFLSWFLTRRLVFGTQEQKNKAAYEIRVLARSSIFNRTCLVEVGTVPPLLGLLTTNDKSTQENAISSLLKLSKHASGSQSIMDSGGLEPILLVLKKGLSLEARQIAAATIFYLSSVKEYRKLIGENPVAIPGLVELVKEGTTCGKKNAVVAIFGLLLLPRNHRRVLEAALAENVVDGAHAILQASALSLIIGMLRSATSRAGKEHSASILLSLCVNVGVEVVAVLAKDPSLMPSLYSLLTDGTSHAAKKARFLIKVLQDFNETTISGLKGSSIPQERSLHVW 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1225g00020 654 Gene3D - 354 637 IPR011989 -
Gabi1225g00020 654 FunFam RING-type E3 ubiquitin transferase 273 345 - -
Gabi1225g00020 654 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Gabi1225g00020 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 347 IPR013083 -
Gabi1225g00020 654 CDD RING-Ubox_PUB 274 326 IPR045210 -
Gabi1225g00020 654 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Gabi1225g00020 654 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Gabi1225g00020 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Gabi1225g00020 654 Pfam Armadillo/beta-catenin-like repeat 408 441 IPR000225 GO:0005515
Gabi1225g00020 654 PANTHER U BOX DOMAIN-CONTAINING 79 629 - -
Gabi1225g00020 654 SUPERFAMILY ARM repeat 385 629 IPR016024 -
Gabi1225g00020 654 SUPERFAMILY RING/U-box 273 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1225g00020 Gabi-Chr1225 184897 187990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1225g00020 1 654 U-box Gene Family AT1G60190 39.625 1.50e-163 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1225g00020 - - tpra:123884536 902.123