LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1225g00016	ATGAAGGAAAGCAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCATAGATGAACAGCTTGAGAGACACCTCAACAAGGTATTGATCATAGACAAGAAAAAGCGAACAGAAGAGGAAGATGTTGATCATGTTCATGTTCACACAAGTGCTACTTCTTCACCAACTTCCATTAAATTCAAAGGTGCTGGTGGGGTTACCTTCAAGAAGCAAAAGCAGGAGTGGGAGATTGATACTTCTAAACTAATCATCAAGAGTGTTATAGCACGTGGCACTTTTGGCACGGTTCATCGTGGTGTCTATGATGCCCAAGATGTTGCTGTTAAATTGCTGGACTGGGGTGAAGAAGGCCAAAGGACAGAAGCTGAAGTTGCTTCCCTAAGGGCAGCATTTATACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGTTTATAGGGGCAACAATGGGGTCTTCAGAATTGCAGATACAAACTGATAATGGTCTAATTAGCATGCCAAGCAATGTTTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGTACGCTGAAATCATATCTAATAAAGAACAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCAAGAGGGCTGAGTTACCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGACAAGACACGCACAGTAAAAATTGCTGATTTTGGGGTTGCACGTGTCGAGGCATCAAATCCTAATGATATGACTGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGTATCTGTTTATGGGAGACATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATTACTTCAGCCGTTGTTCGCCAGAATTTGAGACCAGAAATACCAAGATGTTGCCCAAATTCTCTAGCACATGTAATGAAGAAATGCTGGGATGCCACTCCAGATAAGCGGCCAGAGATGGATGAGGTAGTTTCCATGCTGGAGGCCATTGACACATCAAAAGGTGGAGGTATGATCCCACTTGATCAACAGCAAGGTTGTCTTTGCTTCCGCAAATATAGAGGACCTTGA	1164	0.4296	MKESSDGFVRADQIDLKSIDEQLERHLNKVLIIDKKKRTEEEDVDHVHVHTSATSSPTSIKFKGAGGVTFKKQKQEWEIDTSKLIIKSVIARGTFGTVHRGVYDAQDVAVKLLDWGEEGQRTEAEVASLRAAFIQEVAVWHKLDHPNVTKFIGATMGSSELQIQTDNGLISMPSNVCCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPNSLAHVMKKCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPLDQQQGCLCFRKYRGP	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1225g00016	387	CDD	STKc_MAP3K-like	90	358	-	-
	Gabi1225g00016	387	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	225	237	IPR008271	GO:0004672\|GO:0006468
	Gabi1225g00016	387	FunFam	Serine/threonine-protein kinase HT1	184	369	-	-
	Gabi1225g00016	387	Gene3D	Transferase(Phosphotransferase) domain 1	185	376	-	-
	Gabi1225g00016	387	Pfam	Protein tyrosine and serine/threonine kinase	86	358	IPR001245	GO:0004672\|GO:0006468
	Gabi1225g00016	387	Gene3D	Phosphorylase Kinase; domain 1	72	167	-	-
	Gabi1225g00016	387	PRINTS	Tyrosine kinase catalytic domain signature	219	237	IPR001245	GO:0004672\|GO:0006468
	Gabi1225g00016	387	PRINTS	Tyrosine kinase catalytic domain signature	181	194	IPR001245	GO:0004672\|GO:0006468
	Gabi1225g00016	387	PRINTS	Tyrosine kinase catalytic domain signature	285	307	IPR001245	GO:0004672\|GO:0006468
	Gabi1225g00016	387	PRINTS	Tyrosine kinase catalytic domain signature	329	351	IPR001245	GO:0004672\|GO:0006468
	Gabi1225g00016	387	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	57	361	-	-
	Gabi1225g00016	387	SMART	serkin_6	84	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1225g00016	387	FunFam	Kinase suppressor of Ras 1	73	168	-	-
	Gabi1225g00016	387	ProSiteProfiles	Protein kinase domain profile.	84	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1225g00016	387	SUPERFAMILY	Protein kinase-like (PK-like)	68	358	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1225g00016	Gabi-Chr1225	162793	167541	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1225g00016	1	319	MAP Kinase Kinase Kinase	AT5G50000	80.251	0.0	545

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Gabi1225g00016		PK_Tyr_Ser-Thr	1.2e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1225g00016	-		-	gmx:100807921	714.531