Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1225g00015 ATGAAGAAATCAAATACTAATAGCGATTCATCAAAACTTGATCGCAAAACAATAGAAAGGAACCGCAGAATTCACATGAAAGCTCTCTGCTTCAAGCTTGTTTCTACTATTCCTTCCAATTACATCAAAGCCACCAAGGACATGCTGACACAGCAGGACCAGCTGGATATAGCAGCCACTTACATAAAGCATCTGAGAGAAAGAATAGACAAATTGAAGGAGAAGAAGGAGGAAGCCATGCGCATATTGATGAGATCAAACCAACGCAATAACAGTATTTCCAATATTGGTTCAAAATTGCCCCTACTTGAGATAAGAGACTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGTTGTACAAGAACTTCATGCTCTACGAAGTAATTACTGTCCTTGAGGAAGAAGGCGCTGAAGTTGTCACTGCAAACCACTCTACTGTTGGCGATAAGATTTTTTACACTTTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTAGAGCCAACAAGGGTATATCAGAGGCTTCAGGAGTTGATTGCACCACCAGAAAGTTGTACTATTGGCATGGACAACACATTATTAGAAAATGACAACATGCATTGGGCGTTGTTATTCGGACCATAG 627 0.4035 MKKSNTNSDSSKLDRKTIERNRRIHMKALCFKLVSTIPSNYIKATKDMLTQQDQLDIAATYIKHLRERIDKLKEKKEEAMRILMRSNQRNNSISNIGSKLPLLEIRDLGSGIEVMLISGLYKNFMLYEVITVLEEEGAEVVTANHSTVGDKIFYTFHAQVKISRVGVEPTRVYQRLQELIAPPESCTIGMDNTLLENDNMHWALLFGP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1225g00015 208 Gene3D - 1 96 IPR036638 GO:0046983
Gabi1225g00015 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 65 IPR011598 GO:0046983
Gabi1225g00015 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 179 - -
Gabi1225g00015 208 FunFam Transcription factor bHLH162 2 93 - -
Gabi1225g00015 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 89 IPR036638 GO:0046983
Gabi1225g00015 208 Coils Coil 55 89 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1225g00015 1 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.737 1.17e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1225g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1225g00015 - - gmx:100811485 283.493