Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1225g00013 ATGAAGTCAAATAATGTTTTAATTCATCAAATCCCAGTACTAATTCAATCTCACCTTTATCCCTCCTCTCCCTTCCTTTTCTATGCTTCTAGAGATTTTGGGCGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTAGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATAACTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTCTGCCTGAAAATGGTCAGAAGTGGGGCTTCCTCATCTGGTTAATTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCATGTCACTGGGGAAGTGGTTGACGCGAAGACAAGCACACTTATTGCGTGCCCAACAGGGCATCCCTGTATCTGAATATGGGATTCTGGTTGATATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAGCAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCAACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTACCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTCTGTCCAATCTCCGTGCTGATTCCGAACGATCTTCTGCTAGTGTTGTGACAACAACCAGATACGTGAGAGGCCAACCATCTAGTCAAAGTTATCGGTTAAGATTACAAGGTCTTCTCCGCCCAGTGCGTGCTGGAATTGCAGGGCCAGTTGGTGACACGGATAATGCTTTGGAAAATGCTGAGAACGGTGTTGTACCTATTGTGATTCGAAATGCATCAACTGGAGACCAGGTCTCTTCTGTGGAATGCATGCCTGTCAGTGTTTCCTCTGCACAAAGTTAG 1026 0.46 MKSNNVLIHQIPVLIQSHLYPSSPFLFYASRDFGRQQRYARFCGRVVVLSILVLLLYPFLWAWTITGTLWFSSAKNCLPENGQKWGFLIWLIFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGILVDMIRVPDWAFEAAGQEARGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAGIAGPVGDTDNALENAENGVVPIVIRNASTGDQVSSVECMPVSVSSAQS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1225g00013 341 Pfam Ring finger domain 195 237 IPR001841 -
Gabi1225g00013 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 31 320 IPR044793 GO:0004842|GO:0010182
Gabi1225g00013 341 SMART ring_2 196 236 IPR001841 -
Gabi1225g00013 341 SUPERFAMILY RING/U-box 178 245 - -
Gabi1225g00013 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 242 IPR013083 -
Gabi1225g00013 341 FunFam E3 ubiquitin-protein ligase SIS3 164 242 - -
Gabi1225g00013 341 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1225g00013 Gabi-Chr1225 98755 104344 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1225g00013 32 321 C3H Transcription Factor Family AT3G47990 74.061 9.02e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1225g00013 K16284 - gmx:100812016 582.408