Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1225g00012 ATGGCTATCAGAGGCGTTGATTTCAAATGGTACGATGGGTTTTTCTTGTCCATGCTCGCCACTAGCGTAGTTATTGTCGCAATTAATTGGAAGCGGTATCGTACTTGTACTTACCCGTTGCACATATGGATCATGGTTGACTACACTTCTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAATGGGCTTGCTGCGGGAATGGGTTTAGATTTTGGGCGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTAGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATAACTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTCTGCCTGAAAATGGTCAGAAGTGGGGCTTCCTCATCTGGTTAATTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCATGTCACTGGGGAAGTGGTTGACGCGAAGACAAGCACACTTATTGCGTGCCCAACAGGGCATCCCTGTATCTGAATATGGGATTCTGGTTGATATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAGCAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCAACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTACCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTATTTCCAAATCTTGATCTTAGTGCTCTGTCCAATCTCCGTGCTGATTCCGAACGATCTTCTGCTAGTGTTGTGACAACAACCAGATACGTGAGAGGCCAACCATCTAGTCAAAGTTATCGGTTAAGATTACAAGGTCTTCTCCGCCCAGTGCGTGCTGGAATTGCAGGGCCAGTTGGTGACACGGATAATGCTTTGGAAAATGCTGAGAACGGTGTTGTACCTATTGTGATTCGAAATGCATCAACTGGAGACCAGGTCTCTTCTGTGGAATGCATGCCTGTCAGTGTTTCCTCTGCACAAAGTTAG 1143 0.4654 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYRTCTYPLHIWIMVDYTSVFVFRLLMFVDNGLAAGMGLDFGRQQRYARFCGRVVVLSILVLLLYPFLWAWTITGTLWFSSAKNCLPENGQKWGFLIWLIFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGILVDMIRVPDWAFEAAGQEARGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAGIAGPVGDTDNALENAENGVVPIVIRNASTGDQVSSVECMPVSVSSAQS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1225g00012 380 SMART ring_2 235 275 IPR001841 -
Gabi1225g00012 380 SUPERFAMILY RING/U-box 217 284 - -
Gabi1225g00012 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Gabi1225g00012 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Gabi1225g00012 380 Pfam Ring finger domain 234 276 IPR001841 -
Gabi1225g00012 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Gabi1225g00012 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1225g00012 Gabi-Chr1225 98755 104688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1225g00012 58 360 C3H Transcription Factor Family AT3G47990 74.510 1.24e-163 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1225g00012 K16284 - gmx:100812016 720.309