Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1225g00006 ATGGGAGGTGGGCATGGAAATAAGAAGGGGTTCTGGAGTGTAGAGGAAGACAGAATTTTAATGGATTACGTAAAGAAGCATGGAATAGGAAAGTGGAACCGTATAGCTAAACTGACAGGGTTGAAGAGATGCGGCAAAAGTTGCAGACTTAGGTGGATGAATTATCTGAGTCCTAATGTTAAGCGTGGGGATTTCTCAGAGGAAGAGCAAGACCTAATTATTCGCCTCCACAAGCTCCTTGGAAATAGGTGGTCTTTGATCGCTGGGAGGATTCCGGGGAGGACAGACAACCAGGTGAAGAATTATTGGAACAGTCATTTGAGCAAAAAGCTTGGTGTTGTTAAGAAGGAGAAGAGTAAAGTTTGTGCCCCTCCAAAAACATCTGTTCCCAATGAAGCAGAGTCCATTGGGGAAGTTGAAAAGCTCGTCCAAGCAAGCTCGGTTAGTGATCTCAACTTCGGAAGCACTCATGAGGTGATTCTGACTGATGATTTTGGGAGTACCTTTTGTTTTGCTAATAATGAGCTTAATCTCTTCTCTCCTTACTTGATGGAGTCTTTTGAAGACTATTTTATTGGCCTTTAG 585 0.4308 MGGGHGNKKGFWSVEEDRILMDYVKKHGIGKWNRIAKLTGLKRCGKSCRLRWMNYLSPNVKRGDFSEEEQDLIIRLHKLLGNRWSLIAGRIPGRTDNQVKNYWNSHLSKKLGVVKKEKSKVCAPPKTSVPNEAESIGEVEKLVQASSVSDLNFGSTHEVILTDDFGSTFCFANNELNLFSPYLMESFEDYFIGL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1225g00006 194 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 126 - -
Gabi1225g00006 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 56 IPR017930 -
Gabi1225g00006 194 FunFam MYB-related transcription factor 8 61 - -
Gabi1225g00006 194 SMART sant 61 109 IPR001005 -
Gabi1225g00006 194 SMART sant 8 58 IPR001005 -
Gabi1225g00006 194 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Gabi1225g00006 194 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Gabi1225g00006 194 Gene3D - 63 134 - -
Gabi1225g00006 194 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gabi1225g00006 194 CDD SANT 12 56 IPR001005 -
Gabi1225g00006 194 Gene3D - 9 61 - -
Gabi1225g00006 194 CDD SANT 65 107 IPR001005 -
Gabi1225g00006 194 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Gabi1225g00006 194 FunFam Transcription factor WER 63 134 - -
Gabi1225g00006 194 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Gabi1225g00006 194 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1225g00006 Gabi-Chr1225 41513 42364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1225g00006 2 135 MYB Transcription Factor Family AT5G40330 68.345 3.29e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1225g00006 Myb_DNA-binding 3.7e-16 CL0123