LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1224g00005	ATGGGCCTGAAGGGTAAACTAAGTGGAGATATTGGTGGACTCACAGAATTGAGATCCTTGGACTTGTCATTTAACAGAGGTTTAACAGGTCCTCTCTCTCCACAATTAGGAGACCTAAGCAAGCTAAATATTCTGATTTTGGCTGGTTGCAGCTTCAGTGGCAATATTCCAGATTCATTGGGAAATCTTTCAGAGCTATCTTTCCTGGCTTTAAATTCAAACAACTTCACTGGAAAGATACCTCCTTCATTGGGTAAACTCTCCAAACTTTATTGGTTGGATTTGGCAGACAATCAGCTGATGGGGCCTATACCAGTTTCAACCTCCACCACCCCTGGATTAGACCTTCTTTTAAAGGCTAAGCACTTCCATTTCAATAAGAACCAGCTTTCAGGTTTCATTCCCCCCAAACTTTTCAGCTCTGAGATGGTACTCATTCACATATTATTTGATGGAAATAAGTTAATTGGGAGTATACCTTCCACAATAGGACTAGTTCAGACACTTGAGGTTCTTCGGCTTGATAGAAACTTCCTGACAGGAGGGGTCCCATCAAATCTCAATAACCTCACAAACATAAATGAATTGAATTTAGCACACAATAATTTGACAGGTCCTTTGCCAGACTTATCTGAAATGGATACCCTCAACTATATGGATCTTAGTAACAACTCTTTTGAACCATCTGGAGCTCCAACTTGGTTCTCAACTCTACCATCACTCACCACTCTTATTATGGAGTTTGGATCTCTTCAAGGCCCTCTTCCATCGAAACTCTTCAGCATTCCTCAAATACAGCAAGTGAAACTAAAAAACAATGCATTGAACAATACATTGGACATGGGTGACAGCATTTGCCCCCAATTGCAGCTAGTAGATTTGCAAAACAACCAGATATCCTCAGTGACACTCAGTTCACAATACAAAAACACATTGATTCTTATAGGAAATCCAGTGTGCAGCACTGCTCTCTCAAATACTAATTTCTGCCAACTTCAGCAACAGCCTACACAACCCTACTCTACCAGCTTGGCTAATTGTGGAGGCAAATCTTGTCCCCCTGATCAAAAGCTCAGCCCACAAAGCTGTGAATGTGCTTATCCATATGAAGGAATGTTGTACTTTAGAGGACCCTTGTTCAGAGAACTGTCTAATGTAACAACTTTCCATTCACTTGAAATGAGCCTGTGGGTGAAATTGGGTTTAACTCCTGGCTCAGTTTCTTTACAAAACCCCTTCTTCAATGCTGATGATTATCTTCAATTGCAACTAGCACTCTTTCCACCAACAGGGCAATATTTTAATAGGTCAGAAGTTCAAAGAATTGGGTTTGAATTGAGTAATCAAACTTACAAGCCTCCACATGAGTTTGGACCCTATTACTTTATTGCATTTCCTTATACTTTCCCAGCTTCCCACAAAGGAAGTTCTCTTAGCAGAGGTGTTGTTATTGGGATAGCAACTGGCTGCACTTTTCTGGTTCTGAGCCTCATAGGTTTAGGGATATATGCTATTCTGCAAAAGAAGCGTGCAGAGAAAGCCATTGGATTAAGTAGACCATTTGCATCTTGGGCACCAAGTGGCAAAGATAGTGGAGGTGCACCCCAATTAAAGGGAGCAAGATGGTTCTCTTATGATGATCTCAAAAAGTGTACCAGTAATTTCTCTGAAAGCAATGAGATAGGCTTCGGTGGCTATGGCAAGGTGTACAGAGGGATGCTCCCTGATGGAAAAATGGTTGCAATCAAACGAGCTCAGCAAGGATCAATGCAAGGAGGCCTGGAATTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAATCTTGTTGGCCTTGTGGGATTCTGTTTTGAACAAGGAGAACAGATGTTGGTTTACGAATTTATGCCCAATGGAACACTTAGGGAGAGTTTGTCAGTTGCAGGGAGATCTGACATTCATCTTGACTGGAAGAGGAGACTTCGCATTGCTCTTGGTTCGGCCAGAGGACTTGCATACTTACATGAACTTGCCAACCCTCCCATAATCCACCGAGATGTGAAGTCATCTAACATATTACTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGCTTGTCTAAGCTTGTATCAGACAGCGAAAAAGGCCATGTTTCAACTCAGGTTAAAGGAACTTTGGGTTATCTGGATCCTGAATATTACATGACCCAACAACTAACTGAGAAGAGTGATGTGTACAGTTTTGGGGTGGTTATGCTTGAATTGATAACTTCAAGACAACCAATTGAGAAGGGTAAATACATTGTTCGCGAGGTGCGCACCTTGATGAATAAGAAGGATGAAGAATATTATGGTTTGAGGGAACTAATGGATCCAGTGGTTAGAAACACACCCAATCTCATAGGATTTGGGAGGTTCTTAGAGTTAACAATGCAATGCGTTGAGGAATCAGCTGCAGAGCGTCCAACAATGAGTGAAGTTGTGAAAACACTGGAAACCATTCTACAGAATGATGGGATGAATACTAACTCTACTTCTGCATCCTCATCTGCCACTGACTTTGGAGTTTCTAAGGGCGCAATTAGACATCCTTACATTGATACTACTTTTACTAAGAAGGACAATGTTAATGACAGTAATGCCTTTGACTACAGCGGCGGGTACACACTTTCAGCAAAAGTTGAACCCAAATAG	2682	0.4142	MGLKGKLSGDIGGLTELRSLDLSFNRGLTGPLSPQLGDLSKLNILILAGCSFSGNIPDSLGNLSELSFLALNSNNFTGKIPPSLGKLSKLYWLDLADNQLMGPIPVSTSTTPGLDLLLKAKHFHFNKNQLSGFIPPKLFSSEMVLIHILFDGNKLIGSIPSTIGLVQTLEVLRLDRNFLTGGVPSNLNNLTNINELNLAHNNLTGPLPDLSEMDTLNYMDLSNNSFEPSGAPTWFSTLPSLTTLIMEFGSLQGPLPSKLFSIPQIQQVKLKNNALNNTLDMGDSICPQLQLVDLQNNQISSVTLSSQYKNTLILIGNPVCSTALSNTNFCQLQQQPTQPYSTSLANCGGKSCPPDQKLSPQSCECAYPYEGMLYFRGPLFRELSNVTTFHSLEMSLWVKLGLTPGSVSLQNPFFNADDYLQLQLALFPPTGQYFNRSEVQRIGFELSNQTYKPPHEFGPYYFIAFPYTFPASHKGSSLSRGVVIGIATGCTFLVLSLIGLGIYAILQKKRAEKAIGLSRPFASWAPSGKDSGGAPQLKGARWFSYDDLKKCTSNFSESNEIGFGGYGKVYRGMLPDGKMVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSVAGRSDIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEYYGLRELMDPVVRNTPNLIGFGRFLELTMQCVEESAAERPTMSEVVKTLETILQNDGMNTNSTSASSSATDFGVSKGAIRHPYIDTTFTKKDNVNDSNAFDYSGGYTLSAKVEPK	893

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1224g00005	893	Gene3D	Ribonuclease Inhibitor	212	258	IPR032675	-
	Gabi1224g00005	893	Gene3D	Phosphorylase Kinase; domain 1	529	630	-	-
	Gabi1224g00005	893	SMART	serkin_6	555	830	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1224g00005	893	Gene3D	Ribonuclease Inhibitor	111	211	IPR032675	-
	Gabi1224g00005	893	SUPERFAMILY	Protein kinase-like (PK-like)	541	842	IPR011009	-
	Gabi1224g00005	893	FunFam	Leucine-rich repeat family protein	1	109	-	-
	Gabi1224g00005	893	CDD	STKc_IRAK	561	830	-	-
	Gabi1224g00005	893	Pfam	Protein tyrosine and serine/threonine kinase	558	827	IPR001245	GO:0004672\|GO:0006468
	Gabi1224g00005	893	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	677	689	IPR008271	GO:0004672\|GO:0006468
	Gabi1224g00005	893	Gene3D	Ribonuclease Inhibitor	1	110	IPR032675	-
	Gabi1224g00005	893	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	631	844	-	-
	Gabi1224g00005	893	FunFam	Leucine-rich repeat protein kinase family protein	523	630	-	-
	Gabi1224g00005	893	FunFam	Predicted protein	112	333	-	-
	Gabi1224g00005	893	SUPERFAMILY	L domain-like	3	334	-	-
	Gabi1224g00005	893	Gene3D	Transferase(Phosphotransferase) domain 1	631	853	-	-
	Gabi1224g00005	893	Gene3D	Ribonuclease Inhibitor	259	337	IPR032675	-
	Gabi1224g00005	893	PANTHER	RECEPTOR-LIKE PROTEIN 55	16	830	-	-
	Gabi1224g00005	893	ProSiteProfiles	Protein kinase domain profile.	555	831	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1224g00005	893	ProSitePatterns	Protein kinases ATP-binding region signature.	561	583	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1224g00005	Gabi-Chr1224	183254	188533	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1224g00005	1	893	Receptor kinase-like Gene Family	AT1G79620	73.456	0.0	1363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Gabi1224g00005		PK_Tyr_Ser-Thr	5.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1224g00005	-		-	gmx:100792249	1615.9