Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00023 ATGGAAAAGCTAATTTTCAGTGGTCTAGCATTGCTTGTTGGGTTATTCGCCACAGAACTTAGAGTAGCATCCGCAGTTTGGCAGCGAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGGGGCGCGTGTGGCTATGGAAATCTAGACACGGATGGTTATGGAATAAAAACAGCTGCATTGAGTACTGCTTTATTTAATGATGGAAAATCATGCGGTGGTTGCTATCAGATAGTTTGTGACGCAAATCAAGTGCCCCAATGGTGTCTCAAGGGCACTTCCATCACAATTACAGCCACAAATTTCTGTCCCCCAAACTATGCTCTCCCTAGTGATAATGGTGGTTGGTGCAATCCTCCCAGACCACACTTTGACATGTCTCAACCAGCATTTGAGATGATAGCCAAATACAAGGCTGGAATTGTTCCAATTTTTTACAGGAAAGTTGGGTGCAAAAGAACTGGAGGCATCAGATTTACTATCAATGGGAAAAACTATTTTGAATTAGTGCTTATAAGCAACGTAGGTGGAGCAGGGGATATCTCCGGAGTTTGGATCAAAGGGTCCAATATGAATAACTGGGAAACCATGTCAAGGAATTGGGGATCTAACTGGCAAAGCTTAAGCTATCTCAATGGTCAGAGCTTGTCCTTCAGAGTGCAACTCAGCAGTGGAAAAATTCACACTGCTTATAATGTGGCATCGACCAGTTGGACATTTGGGCAGTCTTTCATCAGCAAGGTTCAGTTCTGA 765 0.4379 MEKLIFSGLALLVGLFATELRVASAVWQRAHATFYGGSDASGTMGGACGYGNLDTDGYGIKTAALSTALFNDGKSCGGCYQIVCDANQVPQWCLKGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFEMIAKYKAGIVPIFYRKVGCKRTGGIRFTINGKNYFELVLISNVGGAGDISGVWIKGSNMNNWETMSRNWGSNWQSLSYLNGQSLSFRVQLSSGKIHTAYNVASTSWTFGQSFISKVQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00023 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Gabi1220g00023 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gabi1220g00023 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Gabi1220g00023 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Gabi1220g00023 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Gabi1220g00023 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Gabi1220g00023 254 Gene3D - 160 254 IPR036749 -
Gabi1220g00023 254 SUPERFAMILY Barwin-like endoglucanases 20 178 IPR036908 -
Gabi1220g00023 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Gabi1220g00023 254 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Gabi1220g00023 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Gabi1220g00023 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Gabi1220g00023 254 PANTHER EXPANSIN-A15 11 251 IPR002963 GO:0009664
Gabi1220g00023 254 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Gabi1220g00023 254 SMART dpbb_1 62 150 IPR007112 -
Gabi1220g00023 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Gabi1220g00023 254 FunFam Expansin 17 156 - -
Gabi1220g00023 254 Gene3D - 16 156 IPR036908 -
Gabi1220g00023 254 CDD DPBB_EXPA_N 27 155 - -
Gabi1220g00023 254 Pfam Lytic transglycolase 62 150 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00023 Gabi-Chr1220 164580 165617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00023 5 254 Expansin Gene Family AT4G01630 74.603 2.29e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1220g00023 - - gmx:100783801 486.878