Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00019 ATGGGTAACGGCACTTCTCGTGTTGTTGGCTGTTTGGTGCCATTCAATGGCAAAAGTGGAGTTGATTTGGAGTTTTTAGAGCCATTAGATGAAGGGTTAGGCCATTCCTTCTGTTATGTGAGGCCATCTATTTTTGAATCTCCTGCCATTAGCCCATCAAACTCTGAGAGGTTTACAGTTGATTCCAGTACCCTGGATTCTGAAACCTTGAGTGGATCCTTTAGGCATGATAGTATGGAAGATTCTTCTGGCATACACAAGCCGAGTAAGAATTTTCCAGAAACCACATTCAAGACGATTTCAGGGGCTTCTGTTAGTGCCAATGTTTCAACTGCAAGGATTTGTAACCAGAGTGCATTGTTTGCTAGTGATGTCCTGGAACCTGCTGCTTCATTTGAGGGAACTGCTTCTTTTGCTGCAATCCCTTTGCAGCCTGTTCCACGTGGTTCTGGACCTTTGAATGGTTTCATGTCTGGCCCCCTGGAGAGAGGTTTTGCCTCAGGTCCATTGGATAGGGGTGGTGGTTTCATGTCTGGGCCAATAGAGAAGGGAGTTATGTCAGGTCCTCTTGATGCCACTGACAAATCCAATTTTTCGGCACCACTTGCACGTGGTCGTCGAAGGCCAGGCCTCCAACATCTCATGAGAAGTGTAAGTGGACCAATGAAGAACACTTTCTCTCGGACCTTCTCTAAGCATTCTATGGGTAGCAGTTGGATGCAAAGGTTATTCTTTCACCCAGTGACTCAACTAGCCTGGCATTCCAAAGATGCAAAGTTTCGACCTGAAGTCTCAAGGAACTGTATTGAAGTTGGACCATCTGAAGCGGAGTATAAGCATACACACAATTTGCAGTGGGCTCATGGTAAGGCTGGTGAAGATAGGGTTCATGTTGTGCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGATGGTTTTAGTGGACCAGATGCACCTGATTTTCTGATGAGCCATCTTTATAGATTTGTAGACAAGGAATTGGAAGGTTTACTTTGGGATTATGAAGATAATCCTATAGATCCATTTAAACCTGAAGTCCCTGAAACTGTAAAAGCTGTGGTTGCTCCAGAATGCAGTAGGGGGGAAATGTCTGATACTCATGCTAATTCAAATCAAGAATGTTTAGAAGCTTCTTCTGGTTCAGTGATGATCAAGGATCAATCAACTGCCAGGGAGATAGTTGAGGAAAATGCTGAAGCTAAGATTAATGTTGAACACCTGTTACCTAATTGTGGAAGTCCCAGTATCTCGTGTACTCTTCCAGCTTCCGGTCAACTTGGACAATTGACTGGAAAAGGTAGAAAAAGTGTGCGGCTTTATGAGTTACTCCAGATGGAATCTTGGGATGAACATGGTTTTTGGTCAGTCTCAGAACAATGTAAAGATTCTTCGGTTTGTAGGGAATCAACACTAGATAGGTATATGAGACCTTGCTCATCTAATGCAAAAGAAGATGGTTCTAAACATCAGGAAGAAGGTCCCACTACATCAGGAGAAAATGTGGGCACTGGGTTTGATTCAACCAATCAGGAACCTGAAGCTGCTTTTTCTGTTTTGGGACAAAGGCAGAATTCGAGAAAGTCATTTATCAGTACAAAAATCAGAAAAATGTACAGGAAGCCAAAGTCCTTGTGTAAGAAACTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGGAAGTTGTGTTGATGAGAAAATATTGGAAGCCTCAGGACCAATTAGAAAATGCAAGTCTGGAGTAGATCATAACGCTGTTTTAAGAGCAATGGCTCGAGCTCTTGAAAGAACAGAAGAGGCATACTTGGAAATGGTGGAGCATAATCTGGACAAAAATCCAGAGCTTGCTTTAATGGGATCATGTGTTTTAGTGATGCTGATGAAGGATCAAGATGTTTATGTCATGAACCTTGGAGATAGTCGAGTGATTGTGGCTCAAGAAAGACCAAATGATCGTCATCCTAATCCAAGTTTTGTCAAGGATGATGTGAGGCATAGAAATCGATCTAGAGAGTCATTAGTACGCATGGAGCTGGATAGGATTTCGGAGGAGTCCCCAATTCACATGCATAACAGTCATGTCAACAAGATGAATAAAAACCGTGAGATATCCATGTGCAGATTAAGAATGAGGGCTCTTCAGCTTTCCACTGATCACAGCACAGGTATTGAAGAGGAAGTTTTTAGAATAAGAGCAGAACACCCGGATGATAATCAAGCCATATTAAATGATCGAGTGAAAGGACATTTAAAAGTCACCAGAGCATTTGGTGCTGGGTTCTTGAAGAGGCCATCTTTTAATGAAGCTCTACTGGAGGTGTTTCGAGTTGATTATGTGGGCTCTGCTCCTTACCTAAGTTGCACACCTTCTGTTCTTCATCACCGCCTTTCCTCGAGTGATCGTTTCTTGGTACTTTCCTCTGATGGGCTTTACCAATACTTCAGCAATGAAGAGGTAGTTGCCCATGTCACATGGTTCATGGAAAATGTCCCCGAAGGTGATCCTGCACAATACCTTATTGCGGAGCTTCTATTCTGTGCTGCTAAAAAGAATGGAATGGACTTTCATGATTTGCTTGATATTCCTCAAGGAGATCGACGTAAATATCACGATGATGTATCTGTTATGGTGGTTTCTTTGGAGGGAAGGATTTGGAGATCATCAGGATAG 2694 0.4265 MGNGTSRVVGCLVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEDSSGIHKPSKNFPETTFKTISGASVSANVSTARICNQSALFASDVLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIEKGVMSGPLDATDKSNFSAPLARGRRRPGLQHLMRSVSGPMKNTFSRTFSKHSMGSSWMQRLFFHPVTQLAWHSKDAKFRPEVSRNCIEVGPSEAEYKHTHNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFVDKELEGLLWDYEDNPIDPFKPEVPETVKAVVAPECSRGEMSDTHANSNQECLEASSGSVMIKDQSTAREIVEENAEAKINVEHLLPNCGSPSISCTLPASGQLGQLTGKGRKSVRLYELLQMESWDEHGFWSVSEQCKDSSVCRESTLDRYMRPCSSNAKEDGSKHQEEGPTTSGENVGTGFDSTNQEPEAAFSVLGQRQNSRKSFISTKIRKMYRKPKSLCKKLFPWSYDWHREGSCVDEKILEASGPIRKCKSGVDHNAVLRAMARALERTEEAYLEMVEHNLDKNPELALMGSCVLVMLMKDQDVYVMNLGDSRVIVAQERPNDRHPNPSFVKDDVRHRNRSRESLVRMELDRISEESPIHMHNSHVNKMNKNREISMCRLRMRALQLSTDHSTGIEEEVFRIRAEHPDDNQAILNDRVKGHLKVTRAFGAGFLKRPSFNEALLEVFRVDYVGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHDLLDIPQGDRRKYHDDVSVMVVSLEGRIWRSSG 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00019 897 MobiDBLite consensus disorder prediction 69 90 - -
Gabi1220g00019 897 ProSiteProfiles PPM-type phosphatase domain profile. 277 888 IPR001932 -
Gabi1220g00019 897 FunFam Protein phosphatase 2C 32 254 422 - -
Gabi1220g00019 897 MobiDBLite consensus disorder prediction 486 518 - -
Gabi1220g00019 897 MobiDBLite consensus disorder prediction 487 501 - -
Gabi1220g00019 897 Gene3D - 257 420 IPR036457 -
Gabi1220g00019 897 CDD PP2Cc 594 888 IPR001932 -
Gabi1220g00019 897 PANTHER PROTEIN PHOSPHATASE 2C 278 887 IPR015655 GO:0004722|GO:0006470
Gabi1220g00019 897 MobiDBLite consensus disorder prediction 502 518 - -
Gabi1220g00019 897 SMART PP2C_4 277 886 IPR001932 -
Gabi1220g00019 897 Gene3D - 489 894 IPR036457 -
Gabi1220g00019 897 Pfam Protein phosphatase 2C 713 836 IPR001932 -
Gabi1220g00019 897 SUPERFAMILY PP2C-like 289 889 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00019 Gabi-Chr1220 149822 155996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00019 1 897 PP2C-type Phosphatase Gene Family AT2G46920 64.609 0.0 1127