Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00015 ATGGCATCTTCATTCTCAACGCAGTTGGTACATAGTCAGAACTTACTTCCTCGTTTTCATCATGTCCAGGGGAATTTTAGCCAAGATGTGTCAAAAGCTGGAAGGCCCCATGTGGTCTATAGCAGTACCGGATTACAGCTTGGTTACGGCAAAACATTGGCATCAAAATCTCATTATGCTTCGAGGTTTTCTCTCACACAACAATCTGAAGCAAAACCAATCACCTATAGGAGAATGACATGTATTAATGCTAAGGAAAATGTTCTAGAGCTGCAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTAGAAATTGGGGGTGAACCTACTGGAAGGATTGTTTTCGGCCTATTTGGAGAGGTTGCTCCTAAAACAGTTGAGAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGGATGCTACTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGTGACTTCACTGAAGGAGATGGAACTGGTGGAATCAGTATCTATGGTGCTAAATTTGAAGATGAGAGTTTTGCTTTGAAGCATGTTGGTGCTGGAGTATTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTACAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCGTTGAAGGATTGGATGTTGTGAGGACACTTGAATCGCAGGAGACAAGCAAGTTAGATAACAGCCCTCGGAAATCATGCAGAATTGCTAATTCTGGGGAACTGCCAATAGATGGTTGA 792 0.4192 MASSFSTQLVHSQNLLPRFHHVQGNFSQDVSKAGRPHVVYSSTGLQLGYGKTLASKSHYASRFSLTQQSEAKPITYRRMTCINAKENVLELQAKVTNKCFFDVEIGGEPTGRIVFGLFGEVAPKTVENFRALCTGEKGYGYKGCYFHRIIKDFMIQGGDFTEGDGTGGISIYGAKFEDESFALKHVGAGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVVEGLDVVRTLESQETSKLDNSPRKSCRIANSGELPIDG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00015 263 CDD cyclophilin_ABH_like 98 257 - -
Gabi1220g00015 263 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 258 IPR002130 GO:0000413|GO:0003755
Gabi1220g00015 263 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 256 IPR002130 GO:0000413|GO:0003755
Gabi1220g00015 263 Gene3D - 87 262 IPR029000 -
Gabi1220g00015 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Gabi1220g00015 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Gabi1220g00015 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Gabi1220g00015 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Gabi1220g00015 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Gabi1220g00015 263 FunFam Peptidyl-prolyl cis-trans isomerase 84 263 - -
Gabi1220g00015 263 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Gabi1220g00015 263 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 98 259 - -
Gabi1220g00015 263 SUPERFAMILY Cyclophilin-like 91 259 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00015 Gabi-Chr1220 127447 130975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00015 27 248 U-box Gene Family AT5G67530 36.638 1.94e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1220g00015 K03768 - gmx:100526955 441.81