Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00014 ATGGCATCTTCATTCTCAACGCAGTTGGTACATAGTCAGAACTTACTTCCTCGTTTTCATCATGTCCAGGGAAGGCCCCATGTGGTCTATAGCAGTACCGGATTACAGCTTGGTTACGGCAAAACATTGGCATCAAAATCTCATTATGCTTCGAGGTTTTCTCTCACACAACAATCTGAAGCAAAACCAATCACCTATAGGAGAATGACATGTATTAATGCTAAGGAAAATGTTCTAGAGCTGCAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTAGAAATTGGGGGTGAACCTACTGGAAGGATTGTTTTCGGCCTATTTGGAGAGGTTGCTCCTAAAACAGTTGAGAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGGATGCTACTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGTGACTTCACTGAAGGAGATGGAACTGGTGGAATCAGTATCTATGGTGCTAAATTTGAAGATGAGAGTTTTGCTTTGAAGCATGTTGGTGCTGGAGTATTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTACAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCGTTGAAGGATTGGATGTTGTGAGGACACTTGAATCGCAGGAGACAAGCAAGTTAGATAACAGCCCTCGGAAATCATGCAGAATTGCTAATTCTGGGGAACTGCCAATAGATGGTTGA 762 0.4199 MASSFSTQLVHSQNLLPRFHHVQGRPHVVYSSTGLQLGYGKTLASKSHYASRFSLTQQSEAKPITYRRMTCINAKENVLELQAKVTNKCFFDVEIGGEPTGRIVFGLFGEVAPKTVENFRALCTGEKGYGYKGCYFHRIIKDFMIQGGDFTEGDGTGGISIYGAKFEDESFALKHVGAGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVVEGLDVVRTLESQETSKLDNSPRKSCRIANSGELPIDG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00014 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 131 148 IPR020892 GO:0003755|GO:0006457
Gabi1220g00014 253 Gene3D - 77 252 IPR029000 -
Gabi1220g00014 253 CDD cyclophilin_ABH_like 88 247 - -
Gabi1220g00014 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 222 IPR002130 GO:0000413|GO:0003755
Gabi1220g00014 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Gabi1220g00014 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Gabi1220g00014 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 148 IPR002130 GO:0000413|GO:0003755
Gabi1220g00014 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 206 IPR002130 GO:0000413|GO:0003755
Gabi1220g00014 253 SUPERFAMILY Cyclophilin-like 81 249 IPR029000 -
Gabi1220g00014 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 88 249 - -
Gabi1220g00014 253 FunFam Peptidyl-prolyl cis-trans isomerase 74 253 - -
Gabi1220g00014 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 91 246 IPR002130 GO:0000413|GO:0003755
Gabi1220g00014 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 248 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00014 Gabi-Chr1220 127443 130976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00014 101 238 U-box Gene Family AT5G67530 49.640 7.97e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1220g00014 K03768 - gmx:100526955 418.698