Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00013 ATGGCATCTTCATTCTCAACGCAGTTGGTACATAGTCAGAACTTACTTCCTCGTTTTCATCATGTCCAGGGAAGGCCCCATGTGGTCTATAGCAGTACCGGATTACAGCTTGGTTACGGCAAAACATTGGCATCAAAATCTCATTATGCTTCGAGGTTTTCTCTCACACAACAATCTGAAGCAAAACCAATCACCTATAGGAGAATGACATGTATTAATGCTAAGGAAAATGTGAAGCTGCAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTAGAAATTGGGGGTGAACCTACTGGAAGGATTGTTTTCGGCCTATTTGGAGAGGTTGCTCCTAAAACAGTTGAGAATTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGGATGCTACTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGTGACTTCACTGAAGGAGATGGAACTGGTGGAATCAGTATCTATGGTGCTAAATTTGAAGATGAGAGTTTTGCTTTGAAGCATGTTGGTGCTGGAGTATTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTACAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCGTTGAAGGATTGGATGTTGTGAGGACACTTGAATCGCAGGAGACAAGCAAGTTAGATAACAGCCCTCGGAAATCATGCAGAATTGCTAATTCTGGGGAACTGCCAATAGATGGTTGA 759 0.4203 MASSFSTQLVHSQNLLPRFHHVQGRPHVVYSSTGLQLGYGKTLASKSHYASRFSLTQQSEAKPITYRRMTCINAKENVKLQAKVTNKCFFDVEIGGEPTGRIVFGLFGEVAPKTVENFRALCTGEKGYGYKGCYFHRIIKDFMIQGGDFTEGDGTGGISIYGAKFEDESFALKHVGAGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVVEGLDVVRTLESQETSKLDNSPRKSCRIANSGELPIDG 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00013 252 Gene3D - 75 251 IPR029000 -
Gabi1220g00013 252 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 89 247 IPR002130 GO:0000413|GO:0003755
Gabi1220g00013 252 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 87 248 - -
Gabi1220g00013 252 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 90 245 IPR002130 GO:0000413|GO:0003755
Gabi1220g00013 252 CDD cyclophilin_ABH_like 87 246 - -
Gabi1220g00013 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 205 IPR002130 GO:0000413|GO:0003755
Gabi1220g00013 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 IPR002130 GO:0000413|GO:0003755
Gabi1220g00013 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 193 IPR002130 GO:0000413|GO:0003755
Gabi1220g00013 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 206 221 IPR002130 GO:0000413|GO:0003755
Gabi1220g00013 252 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Gabi1220g00013 252 SUPERFAMILY Cyclophilin-like 80 248 IPR029000 -
Gabi1220g00013 252 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 130 147 IPR020892 GO:0003755|GO:0006457
Gabi1220g00013 252 FunFam Peptidyl-prolyl cis-trans isomerase 73 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00013 Gabi-Chr1220 127436 130980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00013 39 237 U-box Gene Family AT5G67530 40.500 5.79e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1220g00013 K03768 - gmx:100526955 412.149