Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00008 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTCTGGTCACCTGAAGAGGATGAAAAACTTCTGAGGCATATTACTAAGTATGGCCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAGAGATGTGGTAAGAGCTGCAGGCTTAGGTGGATCAACTACTTAAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAATCTTATCGTTGAACTTCATGCAGCATTAGGGAATAGATGGTCTCAAATAGCGGCACAATTGCCAGGGAGGACTGACAATGAAATAAAGAATCTGTGGAACTCTTGTTTGAAGAAGAAACTGAGGCAAAAAGGAATAGACCCTGTCACTCATAAACCACTGTCCCAGGTTGAGAGTGGAGAGGACAATGCTAAGAGCCAAAAGAAAGCACCTGGAGTATCTAGTGAATTGAACCTCCTGAAATCTGAGAGCTCCAAGTCAGATGCAGCTTCCTCTGAGCAGAGAACATCTTCAATTTCCCCAAAAGCCTATGCACCCGAGATGGAAGGTTCTTACAGCCCCAAGATTTACAGCAAAAGTGATGGCAATTTGATAACCAATTGTTGCAGCAAAGACTTGTTCCTAGACAAGTTTATGAGTACTCGCCAGGAGAGCTACACCACAAGTTGCCACCCCTCAGATTTGATGGGGAATTTTCCCCTTCAGATGAGTTATGCTACCACTGACTTTCTCCCAACTGATTCAAACTCTAGTCATTGGTTCAGCCAAACTGGAAGGCCTTTTGATATGAATTCTGAATTTCCTTTCAATGCCACTTCTATTCTTACACCTACAACCAGCTTGTTTCTTCCCAGTTCTTTTTGCTACAAGCCTTCATTTTCTGTTCCCTCTGACAATATTTCTACAGCCTATGGATCCAATTACTGGGAAGCCAATGCCTCCAACAATAGCAATAGCAGCAACAGAAGTAATAGCAGCACAGAGTTGAGAAGTAGCAGCCCCTTAAACGTACATAACAATATCCTTTCTTCTTGGGGATTGGCAGATTGTAGCACCTCTACTAAAGAGGCTCAAATTCATATGATGGAAAACCAGACTGAAGAAGCCAAATGGGATGAGTACCTTCACAACCAAATCTTAATGCCATCTTCCGTACAAAATCAAGCACCTGAATCTTTATGCAACGAGATTAAGCCTGCCATGCATTTGGTACCTGATACTTTAGGGGCTATACTACCTCATACCAAGCATCAAGAACCGTCTCAAACTTCTAGTATCTTTTCCAAGGACATCCAGAAGCTCAGAGCAGCCTTTGGACATATGTAG 1332 0.4309 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIVELHAALGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSQVESGEDNAKSQKKAPGVSSELNLLKSESSKSDAASSEQRTSSISPKAYAPEMEGSYSPKIYSKSDGNLITNCCSKDLFLDKFMSTRQESYTTSCHPSDLMGNFPLQMSYATTDFLPTDSNSSHWFSQTGRPFDMNSEFPFNATSILTPTTSLFLPSSFCYKPSFSVPSDNISTAYGSNYWEANASNNSNSSNRSNSSTELRSSSPLNVHNNILSSWGLADCSTSTKEAQIHMMENQTEEAKWDEYLHNQILMPSSVQNQAPESLCNEIKPAMHLVPDTLGAILPHTKHQEPSQTSSIFSKDIQKLRAAFGHM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00008 443 Gene3D - 11 67 - -
Gabi1220g00008 443 PANTHER MYB DOMAIN PROTEIN 55 1 358 - -
Gabi1220g00008 443 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi1220g00008 443 FunFam MYB transcription factor 68 140 - -
Gabi1220g00008 443 MobiDBLite consensus disorder prediction 316 335 - -
Gabi1220g00008 443 MobiDBLite consensus disorder prediction 122 181 - -
Gabi1220g00008 443 FunFam Myb transcription factor 11 67 - -
Gabi1220g00008 443 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi1220g00008 443 CDD SANT 17 61 IPR001005 -
Gabi1220g00008 443 Gene3D - 69 145 - -
Gabi1220g00008 443 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi1220g00008 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi1220g00008 443 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi1220g00008 443 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi1220g00008 443 MobiDBLite consensus disorder prediction 143 176 - -
Gabi1220g00008 443 SMART sant 66 114 IPR001005 -
Gabi1220g00008 443 SMART sant 13 63 IPR001005 -
Gabi1220g00008 443 CDD SANT 69 109 IPR001005 -
Gabi1220g00008 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00008 Gabi-Chr1220 77774 79690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00008 1 138 MYB Transcription Factor Family AT4G01680 89.855 1.20e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1220g00008 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1220g00008 K09422 - gmx:100815881 674.085