Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00003 ATGGCTGAGAAGATACTTGACTCCACCCGAACAGGGATGATAAAAAGCTCCTCCCATCTAATTACTTCCATTTATGGCAACGATTCCCTTGAGCTGGTATGTGAAAATGGTCAAATTCATATGCAAGGAGGTTCATCATCAAGTGTTACAAGAAAGTTTCCCTCGTGCTATAGATATTCAAAAAGCCATTCCCGTGGCGAAGAAGCAGATAACGAAGATGCCTGCATTGCAAAAAATGCAACGTTAAGCACATATTCGCTTTTGGACTTCCCAGTTCAAAGAGACTCTGACTTATACAAAAGTTGCTGCAAGCTTAAAGTTGGATCTGCAAACTTAAAAGAATCTAAAGGATCACATGGTCTCACAGGAATTCAAGGGCAAAAACCTTTTATTCCAAGAAGTCAGGAACCACCTCCTGATGAGCATTCTGAAGCTGTTGGTCATGACAGTGCCCTTAGTATTCACGAATTCCATGGTCAATATTATAATCAAACCTCAAGCTCTGCAGGAGTTGGATCAAAGAGAAAAGCTCATACTAACTACTGTGATGAACCCTTGCTAGAATCTTCTTCCTTATACTCGCTTGGAGCATCAAGTAACACAAATATCAGTAGCAGGAAACATGATCATGACACCGATGACTCAATATATTTAAGTGATGACTACAATGATGAAGAACCAGAAGATGTAGGTAAGGAAAAGCATGCTCGGAAAGGCACCAGAGTCAAGAGAAGCAGGAATGCAGAGAATCATAATTTACATGAAAGGAAGCGAAGAGATAAGATCAACAAGAAGATGTGCATATTGAAAGAGCTCATACCCAATTGCAATAAGATGGACAAAGCTTCAATACTTGACGATGCCATCGAATATATTAAGACCCTAAAGCTTCAGTTAAAGGTAAGGATGCTGCAGGAGCCTCTGGTGGCAAGTGGCCATATCTGGATTATGCATGAAATATGGCACTTCTTTGAGTTTATGCATGCCTTTTGTAGTTGA 999 0.4024 MAEKILDSTRTGMIKSSSHLITSIYGNDSLELVCENGQIHMQGGSSSSVTRKFPSCYRYSKSHSRGEEADNEDACIAKNATLSTYSLLDFPVQRDSDLYKSCCKLKVGSANLKESKGSHGLTGIQGQKPFIPRSQEPPPDEHSEAVGHDSALSIHEFHGQYYNQTSSSAGVGSKRKAHTNYCDEPLLESSSLYSLGASSNTNISSRKHDHDTDDSIYLSDDYNDEEPEDVGKEKHARKGTRVKRSRNAENHNLHERKRRDKINKKMCILKELIPNCNKMDKASILDDAIEYIKTLKLQLKVRMLQEPLVASGHIWIMHEIWHFFEFMHAFCS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00003 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 295 IPR011598 GO:0046983
Gabi1220g00003 332 MobiDBLite consensus disorder prediction 200 257 - -
Gabi1220g00003 332 CDD bHLH_AtPIF_like 246 304 IPR047265 -
Gabi1220g00003 332 Gene3D - 242 303 IPR036638 GO:0046983
Gabi1220g00003 332 Pfam Helix-loop-helix DNA-binding domain 249 295 IPR011598 GO:0046983
Gabi1220g00003 332 MobiDBLite consensus disorder prediction 117 147 - -
Gabi1220g00003 332 MobiDBLite consensus disorder prediction 243 257 - -
Gabi1220g00003 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 303 IPR036638 GO:0046983
Gabi1220g00003 332 PANTHER TRANSCRIPTION FACTOR PIF3 2 76 IPR044273 GO:0003700|GO:0006355
Gabi1220g00003 332 SMART finulus 252 301 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00003 Gabi-Chr1220 12349 15873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00003 196 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 47.170 1.71e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1220g00003 HLH 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1220g00003 K12126 - gmx:100818543 271.166