Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1220g00002 ATGGCTGAGAAGATACTTGACTCCACCCGAACAGGGATGATAAAAAGCTCCTCCCATCTAATTACTTCCATTTATGGCAACGATTCCCTTGAGCTGGTATGTGAAAATGGTCAAATTCATATGCAAGGAGGTTCATCATCAAGTGTTACAAGAAAGTTTCCCTCGTGCTATAGATATTCAAAAAGCCATTCCCGTGGCGAAGAAGCAGATAACGAAGATGCCTGCATTGCAAAAAATGCAACGTTAAGCACATATTCGCTTTTGGACTTCCCAGTTCAAAGAGACTCTGACTTATACAAAAGTTGCTGCAAGCTTAAAGTTGGATCTGCAAACTTAAAAGAATCTAAAGGATCACATGGTCTCACAGGAATTCAAGGGCAAAAACCTTTTATTCCAAGAAGTCAGGAACCACCTCCTGATGAGCATTCTGAAGCTGTTGGTCATGACAGTGCCCTTAGTATTCACGAATTCCATGGTCAATATTATAATCAAACCTCAAGCTCTGCAGGAGTTGGATCAAAGAGAAAAGCTCATACTAACTACTGTGATGAACCCTTGCTAGAATCTTCTTCCTTATACTCGCTTGGAGCATCAAGTAACACAAATATCAGTAGCAGGAAACATGATCATGACACCGATGACTCAATATATTTAAGTGATGACTACAATGATGAAGAACCAGAAGATGTAGGTAAGGAAAAGCATGCTCGGAAAGGCACCAGAGTCAAGAGAAGCAGGAATGCAGAGAATCATAATTTACATGAAAGGAAGCGAAGAGATAAGATCAACAAGAAGATGTGCATATTGAAAGAGCTCATACCCAATTGCAATAAGATGGACAAAGCTTCAATACTTGACGATGCCATCGAATATATTAAGACCCTAAAGCTTCAGTTAAAGGATTGA 906 0.3974 MAEKILDSTRTGMIKSSSHLITSIYGNDSLELVCENGQIHMQGGSSSSVTRKFPSCYRYSKSHSRGEEADNEDACIAKNATLSTYSLLDFPVQRDSDLYKSCCKLKVGSANLKESKGSHGLTGIQGQKPFIPRSQEPPPDEHSEAVGHDSALSIHEFHGQYYNQTSSSAGVGSKRKAHTNYCDEPLLESSSLYSLGASSNTNISSRKHDHDTDDSIYLSDDYNDEEPEDVGKEKHARKGTRVKRSRNAENHNLHERKRRDKINKKMCILKELIPNCNKMDKASILDDAIEYIKTLKLQLKD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1220g00002 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 295 IPR011598 GO:0046983
Gabi1220g00002 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 300 IPR036638 GO:0046983
Gabi1220g00002 301 CDD bHLH_AtPIF_like 246 299 IPR047265 -
Gabi1220g00002 301 Gene3D - 242 301 IPR036638 GO:0046983
Gabi1220g00002 301 MobiDBLite consensus disorder prediction 117 147 - -
Gabi1220g00002 301 MobiDBLite consensus disorder prediction 243 259 - -
Gabi1220g00002 301 Pfam Helix-loop-helix DNA-binding domain 249 295 IPR011598 GO:0046983
Gabi1220g00002 301 MobiDBLite consensus disorder prediction 200 259 - -
Gabi1220g00002 301 SMART finulus 252 301 IPR011598 GO:0046983
Gabi1220g00002 301 PANTHER TRANSCRIPTION FACTOR PIF3 2 78 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1220g00002 Gabi-Chr1220 12349 20913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1220g00002 206 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 52.632 2.94e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1220g00002 HLH 8.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1220g00002 K12126 - gmx:100818543 270.781