Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1214g00001 ATGTTTCCGATAGGATTGCGTGTTCTTGCTGTTGATAACGATCGAGAAAGCCTTTTCAGTTTAGAGACTATGCTCCGAAGTTGTCAATACCAAGTAACAACGTCTACAGATGCAACGACAGTACTGAGGATGTTGAGAGAAAACAAGTTTGACCTTGTGATCAGTGAACTACACATGCCTGAAATTGAAGGACTTAAGCTGCTTAAGCTCATGCAACCTATGGACATACCTGTTATATTGTTCTCCATTGATTATGACAGAAAGTTGGCGATGGAAGCAGTTACTCTGGGAGCATGTGATTATTTGCAGAAACCAATTAGAATGGAAGAGCTGCAGAATATTTGGCAGCATCTTGGTCATAACAAGGAGCACCAAGCAATCCAAAAGAAGCATCGGGTTATTTGGACGGAGGAGCTGCACCAAAGTTTTTTGGCCGCTGTTAATCAGTTAGGAGGTGTTGACAAGGCTGTAACTAAACAAATTCTTCAAGTGATGAAGGTTGAGGAGCTTACTAGGGCGAATGTGGCCAGCCATCTTCAGAAGTATAGAAAAAGTCTGAACAAAATCAGCTCTAAGCCAACTCAACAAGTTAATAACGTCAGTGCTTTTAGATCGTCTTCACCTGGTGGGATGATTAGAAGATTGGACACTCCTGCTGTTGTGCCAGAGTTGCCTTCTTCTGCAACTCTTCAATTGGATCATGCACAGAACTTAAACAACTCAACCAATGATCAACGTAATTTCCAATCAGCCTTAGTTTATGATAATCAAAATAGTTTACTGGGATTGCCAATGTTTGGGGAGCTTGACCAACTGCTTTGGAATGACATGAGTTTTGCCACCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCACCCTTGCAAGGAAGGAATCTGAGTAGTGTTACAAATGCTCCTGGGCAAACGAGTAATAATGTGCCTTTTCAGAGGTTGGATGACCAAAGACAGGATGGCAGTCATCCTTAA 1044 0.4205 MFPIGLRVLAVDNDRESLFSLETMLRSCQYQVTTSTDATTVLRMLRENKFDLVISELHMPEIEGLKLLKLMQPMDIPVILFSIDYDRKLAMEAVTLGACDYLQKPIRMEELQNIWQHLGHNKEHQAIQKKHRVIWTEELHQSFLAAVNQLGGVDKAVTKQILQVMKVEELTRANVASHLQKYRKSLNKISSKPTQQVNNVSAFRSSSPGGMIRRLDTPAVVPELPSSATLQLDHAQNLNNSTNDQRNFQSALVYDNQNSLLGLPMFGELDQLLWNDMSFATLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGRNLSSVTNAPGQTSNNVPFQRLDDQRQDGSHP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1214g00001 347 MobiDBLite consensus disorder prediction 317 347 - -
Gabi1214g00001 347 Gene3D - 131 190 - -
Gabi1214g00001 347 Pfam Response regulator receiver domain 8 113 IPR001789 GO:0000160
Gabi1214g00001 347 SUPERFAMILY Homeodomain-like 128 188 IPR009057 -
Gabi1214g00001 347 CDD REC_typeB_ARR-like 8 118 - -
Gabi1214g00001 347 Gene3D - 6 130 - -
Gabi1214g00001 347 NCBIfam myb-like DNA-binding domain, SHAQKYF class 130 184 IPR006447 GO:0003677
Gabi1214g00001 347 ProSiteProfiles Response regulatory domain profile. 7 119 IPR001789 GO:0000160
Gabi1214g00001 347 SUPERFAMILY CheY-like 5 126 IPR011006 -
Gabi1214g00001 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 187 IPR017930 -
Gabi1214g00001 347 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 224 IPR045279 GO:0009736
Gabi1214g00001 347 MobiDBLite consensus disorder prediction 317 338 - -
Gabi1214g00001 347 FunFam Two-component response regulator 126 190 - -
Gabi1214g00001 347 SMART REC_2 6 115 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1214g00001 Gabi-Chr1214 13953 20220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1214g00001 2 201 Response Regulator Gene Family AT4G31920 46.281 3.79e-63 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1214g00001 Response_reg 1.4e-20 CL0304