Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1213g00015 ATGACGGCTGAGAGATTTTGTGAGAACGAAGAGGACAAGGCTCTGTTGGAATCTGTATTGGGTACAGAAGCTGTTGCCTTCTTTAGTTCGGCGATTTCCAATGATGTCTTTTCCGACGTTATTGTTCAACCATGTCCTGAATTGGGTGGTATCCACCAGCGATTGTGCCACCTTGTTGATGTTTCCAAGTGGGACTACGCCATTTTCTGGCAAGTTGCTGGCTTGAAATCTGGTGGCTATGCCTTGAAATGGGGTGATGGACACTGTCAAAATCCCAAAGGGGGTCATTGGAATGAGAAGGAGGAGGAGAAGGATGGTGCCAAGAGGCGGGTGCTGCAGAAGCTTCATGCCTGCTTTGGTGGATCTGACTCAAAAGAGGCCATTTTTACAAGGTTGGATAGGGTCTCAGATGTGCATATGTTTTACTTGACCTCAATGTATTATGTATTTGGTTTTAATTCCCAGTTTGGCCCTGCCAGTTCTTTTAAGTGTGGTAAATCAATTTGGGCTTCTGAGACTGCTGGTTGTTTAAACCAATATGAATCAAGATTATTTCTGGTGAAATTGGCTGGTTTTCAGACAGTTGTTTTTGTACCTTTCAAGGCTGGGGTTGTAGAGCTTGGTGCCATGGAAATGATGCCTGAAGAGCAGGGTGTTTTGGAGATGGTCAGAACAACATTTGGGGAATCTAGTCCTGGACAGTCAAAGGTATTACCCAAGATTTTTGGGCATGAGTTAAGCCTGGGGGATTCAAAATCTCAGTCCATAACTATTAGTTTCTCCCCAAAGGTGGAAGATGATTCTGGTTTCACTTCAGACTCCTATGAAGTACAAGCACTAGGGGCAAACCATGCTTTTGGAAATTCTTCCAATGGATGTATAGGCGACAGTAATGAGGCAAAATTGTTCCCTCAGTTAAATCAAATGATTCCTGGGAATTTTAATCCTCAAGCAAGGTTTTCTTGTATAGATATGGGTATTGAAGACTCATCCTCGCCTCATCTAGATGAGCGGAAGCCCAGAAAAAGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAGCCACTGAATCATGTTGAAGCAGAGAGACAAAGGAGGGAGAAGCTTAACCAAAGATTTTATGCCCTAAGAGCTGTTGTTCCTAATATATCTAAAATGGACAAGGCATCTCTGCTTGGTGATGCTATTACTCATATCACTGATCTCCAGAAGAAGATCAAGGTTTTGGAAGCTGAGAAAGACATGGTTAACAATAAGGACCACCAGTTGCCATTTCCAGATATTGATTTTCAGTCTAGACAGGATGATGCAGTTGTTAGAGTGAGCTGCCCCTTGGATATTCATCCAGTTTCTGGAGTTGTTAAAATGTTCAGAGAGCATCAAATTGTAGCTCAAGAGTCTAGTGTTTCAACTGCACAGGATAAGGTAATACACACATTCTCCATAAGAACTCAAGCTGGGGAGGCTGCTGCTGTACAGTTGAAAGAAAAGCTTGAAGCATCTCTTTCCAAAAATTGA 1515 0.4304 MTAERFCENEEDKALLESVLGTEAVAFFSSAISNDVFSDVIVQPCPELGGIHQRLCHLVDVSKWDYAIFWQVAGLKSGGYALKWGDGHCQNPKGGHWNEKEEEKDGAKRRVLQKLHACFGGSDSKEAIFTRLDRVSDVHMFYLTSMYYVFGFNSQFGPASSFKCGKSIWASETAGCLNQYESRLFLVKLAGFQTVVFVPFKAGVVELGAMEMMPEEQGVLEMVRTTFGESSPGQSKVLPKIFGHELSLGDSKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAFGNSSNGCIGDSNEAKLFPQLNQMIPGNFNPQARFSCIDMGIEDSSSPHLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKVLEAEKDMVNNKDHQLPFPDIDFQSRQDDAVVRVSCPLDIHPVSGVVKMFREHQIVAQESSVSTAQDKVIHTFSIRTQAGEAAAVQLKEKLEASLSKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1213g00015 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 423 IPR036638 GO:0046983
Gabi1213g00015 504 PANTHER MYC 49 500 IPR045084 GO:0003700|GO:0006355
Gabi1213g00015 504 MobiDBLite consensus disorder prediction 327 363 - -
Gabi1213g00015 504 SMART finulus 358 407 IPR011598 GO:0046983
Gabi1213g00015 504 MobiDBLite consensus disorder prediction 330 363 - -
Gabi1213g00015 504 CDD bHLH_AtAIB_like 349 412 - -
Gabi1213g00015 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 227 IPR025610 -
Gabi1213g00015 504 Gene3D - 345 418 IPR036638 GO:0046983
Gabi1213g00015 504 FunFam Transcription factor bHLH13 345 419 - -
Gabi1213g00015 504 Coils Coil 391 418 - -
Gabi1213g00015 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Gabi1213g00015 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1213g00015 Gabi-Chr1213 147491 149770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1213g00015 3 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.431 7.98e-158 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1213g00015 bHLH-MYC_N 3.4e-39 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1213g00015 - - gmx:100819968 751.895