Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1213g00011 ATGGAAGGAAACTATCTAACTAGAAACAGAAATAAAGGGGAAAGCTTTGGACTGGAGGAGCATACATGGGGAACTTCATGGCCTGTGAGAAACTATGCTTGTAGTTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCTTTGGGTGGTCACATGAATGTTCACAGGAGGGATAGGGCAAGATTGAGATCATCCTTATCCTCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGTATTAAGCCTAATAACCCAAGTCATCTTTCACCTTCCTCACCATCATATCTATCTGATAATAAGATTTTGAATTGTGCACATCATTCTCCACTTTATAGCCCTTGTCTTACATTGTCTTCTTCCCTTTCCCTAGCTTCTACCAGTGGAGATAAGAAACCAAGACTCCAATCTTCCCAGCTTCCTCTTTTGAGTCCTCAAAGCAGGGAAATTAGGAGTGCTTTAGGAGTTGAGGAATTAAAGGGTTGTGCACTTGAGGATGAACACAAGTTTTTCAAGAATAATGAACACAACATCACGTTGGAGTTGGGAATAGGATTGCATAAACACCCAAAGGAGAAGTTAGATTTGGAACTTCGATTGGGGCATTTCTAG 606 0.4109 MEGNYLTRNRNKGESFGLEEHTWGTSWPVRNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSIKPNNPSHLSPSSPSYLSDNKILNCAHHSPLYSPCLTLSSSLSLASTSGDKKPRLQSSQLPLLSPQSREIRSALGVEELKGCALEDEHKFFKNNEHNITLELGIGLHKHPKEKLDLELRLGHF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1213g00011 201 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gabi1213g00011 201 MobiDBLite consensus disorder prediction 68 91 - -
Gabi1213g00011 201 Gene3D Classic Zinc Finger 20 75 - -
Gabi1213g00011 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Gabi1213g00011 201 SMART c2h2final6 32 54 IPR013087 -
Gabi1213g00011 201 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Gabi1213g00011 201 PANTHER OS07G0101800 PROTEIN 19 200 - -
Gabi1213g00011 201 Pfam C2H2-type zinc finger 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1213g00011 Gabi-Chr1213 93453 94058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1213g00011 20 199 C2H2 Transcription Factor Family AT3G23130 42.632 9.69e-27 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1213g00011 zf-C2H2_6 6.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1213g00011 - - gmx:102662947 216.083