Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1213g00003 ATGGCTTCTGGCTCTGGCTCTGGCTCACCTTGTGGGGCATGCAAGTTCCTCCGCAGAAAATGTGCAGCTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCAATCCATAAGGTGTTTGGTGCCAGCAACGTTTCCAAATTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCGGTTGTCACAATTGCTTATGAGGCACAAGCTCGTATCAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTTTGCCTTACAACAACAGGTGGCGTGCTTGCAGACACAAGTGATGCAAATGAAGGCTCAGCTGGCACAGAACCTGATGGAGACAAGAAACATAGAGAATCAGTGGCCAGGGAATGTAGCTGGACAATCAATGAATCCATTTTGTTTATCTCATAACATGAATCCTATATCTCCTCAGAGCTCACTTGAGTCAATTGATCATAGCAGCATCAATGATGGAATTGGCATGCAAGATATACAAAGCAGAGAGGATAATTTCTCATTCCAAGCTTGTTCTAAGAGAAGATCATATGGTAATAATGACTTGGGTGAGCTGCAAGAATTGGCACTCAGGATGATGAGGAATTGA 618 0.4434 MASGSGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQTQVMQMKAQLAQNLMETRNIENQWPGNVAGQSMNPFCLSHNMNPISPQSSLESIDHSSINDGIGMQDIQSREDNFSFQACSKRRSYGNNDLGELQELALRMMRN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1213g00003 205 Coils Coil 90 110 - -
Gabi1213g00003 205 Pfam Lateral organ boundaries (LOB) domain 10 108 IPR004883 -
Gabi1213g00003 205 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Gabi1213g00003 205 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1213g00003 Gabi-Chr1213 44092 45112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1213g00003 5 205 AS2 family AT2G42430 54.661 4.10e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1213g00003 LOB 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1213g00003 K13944 - gmx:100801508 338.961