Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1212g00001 ATGGGCAACTGTTGCTCTCAAGGTAAAGCTGCCGATGCCCCGGCGGCAGAGCACAATGCTGCCGCCACCACCAACAAGGGAGAAACCAACCAACAAAGCAGCAAACATGAAACTCCCAACAACAACAACAACCACCCTGCCACCACCCCACCAACAACCTCCAAGCCACCAACCTCATCACCCTCACCACCACCATCACAATCATCATCAAAACCCACAAAAACAGCCCCCATTGGGCCTGTCCTTGGAAAACCAATGGAAGACGTGAGAGCCACATACACCATGGGGAAGGAGCTAGGGAGAGGACAGTTTGGTGTCACCCATTTGTGCACACACAAGGTCACAGGCCAAAAGTTTGCATGCAAAACCATTGCCAAGAGAAAGCTTGTTCACAAGGAAGATATAGAAGACGTTAGAAGGGAGGTGCAAATCATGCACCACCTCACGGGTCAACCTAACATTGTGGAACTCAAAGGTGTCTATGAGGATAAACAATCCGTTCATTTGGTTATGGAGTTGTGTGCTGGTGGTGAACTCTTCGATCGTATCATTGCAACCGGACTTTACACAGAACGTGCTGCAGCTTCTTTGTTAAGAACCATTGTGCAGATTGTTCACACTTTTCATTCTATGGGTGTCATTCATAGAGATCTTAAGCCCGAGAATTTCCTCTTGTTGAATAAGGATGAAAATGCACCCCTCAAGGCCACAGATTTTGGTCTATCCGTTTTTTACAAGCAAGGAGATATGTTCAAAGACATTGTTGGTAGTGCATATTACATTGCACCCGAAGTCTTGAAGAGGAGATATGGGCCAGAAGTTGATATATGGAGTGTTGGTGTAATGCTATACATTCTTCTATGTGGTTCTCCTCCATTTTGGGCAGAATCTGAACATGGTATATTCAATGCCATCCTAAGGGGTCACATTGACTTTACAAGCGATCCATGGCCTTCAATTTCACCTGCAGCTAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAACAAAGATTGACAGCATACGAAGTTTTGAATCATCCTTGGATCAAGGAGGACGGAGAAGCACCAGATAGACCTCTTGACAATGCTGTCCTGAATAGACTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCCGGTTGTTTATCTGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGTATGGACACTGACAACAGTGGAACCATTACAATTGAAGAACTCAAGCAAGGGCTTTCAAAACAGGGGACAAAGCTTACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGACGGCAATGGCATCATAGATTATGACGAGTTCATCACAGCAACAATGCACATGAACCGAATGAACAGAGAAGAACATCTGTACACTGCCTTCCAGTACTTCGATAAAGATAATAGCGGGTTCATCACCACTGAAGAACTAGAGCAAGCTCTCCATGAATATAACATGCATGATGGCAGGGACATCAAAGAAATCCTTCAAGAAGTTGATGGAGATAACGATGGTCGCATTAACTATGATGAGTTTGCGGCAATGATGAGAAAAGGAAATCCAGAAGCTCATACTAAGAAGAGGCGTGATTCCTTTGCTTTGCAATAG 1650 0.4412 MGNCCSQGKAADAPAAEHNAAATTNKGETNQQSSKHETPNNNNNHPATTPPTTSKPPTSSPSPPPSQSSSKPTKTAPIGPVLGKPMEDVRATYTMGKELGRGQFGVTHLCTHKVTGQKFACKTIAKRKLVHKEDIEDVRREVQIMHHLTGQPNIVELKGVYEDKQSVHLVMELCAGGELFDRIIATGLYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGDMFKDIVGSAYYIAPEVLKRRYGPEVDIWSVGVMLYILLCGSPPFWAESEHGIFNAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAYEVLNHPWIKEDGEAPDRPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLSKQGTKLTEQEVKQLMEAADADGNGIIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALHEYNMHDGRDIKEILQEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFALQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1212g00001 549 FunFam Calcium-dependent protein kinase 1 95 178 - -
Gabi1212g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Gabi1212g00001 549 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Gabi1212g00001 549 Pfam EF-hand domain pair 468 531 IPR002048 GO:0005509
Gabi1212g00001 549 Pfam EF-hand domain pair 399 459 IPR002048 GO:0005509
Gabi1212g00001 549 MobiDBLite consensus disorder prediction 1 86 - -
Gabi1212g00001 549 ProSiteProfiles Protein kinase domain profile. 93 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1212g00001 549 SMART efh_1 505 533 IPR002048 GO:0005509
Gabi1212g00001 549 SMART efh_1 470 498 IPR002048 GO:0005509
Gabi1212g00001 549 SMART efh_1 398 426 IPR002048 GO:0005509
Gabi1212g00001 549 SMART efh_1 434 462 IPR002048 GO:0005509
Gabi1212g00001 549 ProSitePatterns EF-hand calcium-binding domain. 514 526 IPR018247 -
Gabi1212g00001 549 FunFam calcium-dependent protein kinase 1 179 358 - -
Gabi1212g00001 549 Pfam Protein kinase domain 93 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1212g00001 549 SMART serkin_6 93 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1212g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 505 536 IPR002048 GO:0005509
Gabi1212g00001 549 FunFam Calcium-dependent protein kinase 1 359 534 - -
Gabi1212g00001 549 SUPERFAMILY Protein kinase-like (PK-like) 68 379 IPR011009 -
Gabi1212g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Gabi1212g00001 549 ProSitePatterns Protein kinases ATP-binding region signature. 99 126 IPR017441 GO:0005524
Gabi1212g00001 549 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Gabi1212g00001 549 PANTHER SERINE/THREONINE-PROTEIN KINASE 88 526 - -
Gabi1212g00001 549 Gene3D Transferase(Phosphotransferase) domain 1 179 359 - -
Gabi1212g00001 549 CDD STKc_CAMK 93 350 - -
Gabi1212g00001 549 MobiDBLite consensus disorder prediction 50 70 - -
Gabi1212g00001 549 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Gabi1212g00001 549 MobiDBLite consensus disorder prediction 22 49 - -
Gabi1212g00001 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Gabi1212g00001 549 Gene3D Phosphorylase Kinase; domain 1 95 178 - -
Gabi1212g00001 549 SUPERFAMILY EF-hand 391 531 IPR011992 -
Gabi1212g00001 549 Gene3D - 360 537 - -
Gabi1212g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1212g00001 Gabi-Chr1212 32255 35346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1212g00001 1 544 EF-hand Containing Proteins AT5G12180 77.982 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1212g00001 Pkinase 1.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1212g00001 K13412 - gmx:100781355 918.687