Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1211g00013 ATGGCGTCGGCAAGGAAAGACATGGATCGGACCAAGGGTCCATGGAGCCCCGAAGAGGACGACGCGTTACAGAAGCTAGTTGAAACCCACGGGGCAAGGAACTGGTCTCTGATCAGCAAATCCATTCCGGGTCGATCCGGTAAATCGTGCCGTCTCCGGTGGTGCAACCAGCTGTCGCCGGAGGTGGAGCACAGGCCTTTTACGGCGGAGGAGGACGACACCATCATAAGAGCGCACGCCAGGTTGGGAAACAAGTGGGCCACCATATCTCGCCTCCTTAACGGTCGCACAGATAACGCCGTTAAGAATCATTGGAATTCCACTCTGAAAAGGAAATGCCCTTCCCTCACAACCGATCCCGATTCGCGTGATCATCAACCCCTCAAAAGATCCTCCAGTGTCGGTGCGGGCTATTTAAACCCGAGTAGCCCATCCGGATCCGATTTGAGCGATCCTGGTTTGCCCGCTATGTCCACACCTCCCTCTCAGGTTAACGTTTGCAGACCCATTGCCGTGGTTCCCTCAATCCACCTATTCGAAACTGCGTCTTCGGTTAATGATCCACTAACCTCTCTTAGCTTATCACTGCCCGGGTTCAGTTCCCCCAACAACGGGTCCGGGTCTGGGTCGAACCATGGATTCAGTTCCAGCCCAACCCAGGTGATCCAGACGAGACCACCGTCACCACCGCCGGCTCAGAGCAGCGACGACCGTGGGAAGCAGATGTTCGACGCGGAATTCTTGGCGGTGATGCAAGAGATGATTAGGAAGGAAGTGAGGAGTTACATGTCAGGGATTGAGCAGAATGGACTGTGCATGCAGACTGAAGCCATTAGAAACGCTGTGGTGAAGCGTATGGGAATTAGCAACGTCGAGTAG 879 0.5472 MASARKDMDRTKGPWSPEEDDALQKLVETHGARNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTAEEDDTIIRAHARLGNKWATISRLLNGRTDNAVKNHWNSTLKRKCPSLTTDPDSRDHQPLKRSSSVGAGYLNPSSPSGSDLSDPGLPAMSTPPSQVNVCRPIAVVPSIHLFETASSVNDPLTSLSLSLPGFSSPNNGSGSGSNHGFSSSPTQVIQTRPPSPPPAQSSDDRGKQMFDAEFLAVMQEMIRKEVRSYMSGIEQNGLCMQTEAIRNAVVKRMGISNVE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1211g00013 292 Coils Coil 288 292 - -
Gabi1211g00013 292 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1211g00013 292 FunFam Transcription factor MYB44 66 112 - -
Gabi1211g00013 292 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Gabi1211g00013 292 SMART sant 11 60 IPR001005 -
Gabi1211g00013 292 SMART sant 63 111 IPR001005 -
Gabi1211g00013 292 FunFam MYB transcription factor 12 63 - -
Gabi1211g00013 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Gabi1211g00013 292 Gene3D - 11 63 - -
Gabi1211g00013 292 MobiDBLite consensus disorder prediction 200 238 - -
Gabi1211g00013 292 Pfam Myb-like DNA-binding domain 15 72 - -
Gabi1211g00013 292 PANTHER MYB PROTEIN-RELATED 12 208 - -
Gabi1211g00013 292 CDD SANT 14 56 IPR001005 -
Gabi1211g00013 292 MobiDBLite consensus disorder prediction 133 149 - -
Gabi1211g00013 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Gabi1211g00013 292 Gene3D - 65 133 - -
Gabi1211g00013 292 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Gabi1211g00013 292 CDD SANT 66 109 IPR001005 -
Gabi1211g00013 292 MobiDBLite consensus disorder prediction 200 222 - -
Gabi1211g00013 292 MobiDBLite consensus disorder prediction 111 161 - -
Gabi1211g00013 292 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1211g00013 Gabi-Chr1211 171050 172392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1211g00013 5 292 MYB Transcription Factor Family AT4G37260 47.112 6.07e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1211g00013 Myb_DNA-bind_6 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1211g00013 K09422 - pvy:116130840 350.132