Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1210g00009 ATGAGTAGCATAAGCATGGTAGAGGCAAAGCTACCACCAGGGTTCAGGTTTCATCCTAGAGATGAAGAGCTTGTATGTGATTATTTGATGAAGAAGGTGACACACTGCGATTCCCTTCTCATGATTGATGTTGACCTTAACAAGCGTGAACCATGGGATATTCCAGAAACAGCATGTGTGGGAGGGAAGGAGTGGTATTTTTATTCACAGAGAGACCGTAAATATGCAACAGGGCTACGCACAAACCGTGCCACTGCCTCAGGCTATTGGAAGGCCACAGGGAAGGATAGGCCAATCCTCCGCAAAGGCACTCTTGTTGGGATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGGAAAAGTGATTGGGTCATGCATGAGTTTCGCATTGAAGGTCCCCATGGCCCTCCTAAAATTCCTTCTTCCAAGGAAGACTGGGTTTTGTGTAGGGTGTTCTATAAAAACAGAGAAGTTGCTGCCAAACCTAGCATGGATAGTTGCTATGATGAAACAGGCTCTTCATCTCTTCCTGCATTAATGGACTCTTACATCAGTTTTGACCAAGCTCAAACCAATGCAGATGAATATGAGCAAGTGCCCTGCTTCTCCATTTTTTCTCACAACCAAACAAATCCTATTTTCAACCACATAAACACTATGGAGCCAAAATTACCTGCCAACCATGCAACTACATATGGAGGAGCACCCAATTTGGAATCTTGCTTAGACCCTTTTTCATGTGACAACAAAGTATTAAAAGCTGTTTTGAGTCAGCTCACAAGGATGGAAAGAAACCAACCCAACCCATGTCTAAAAGGGTCACCAAGCTTAGGTGAAGGAAGTTCTGAGAGTTACTTATCTGAAGTGGGTATGCCCAACATGTGGAACAATTATTGA 909 0.44 MSSISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHCDSLLMIDVDLNKREPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKSDWVMHEFRIEGPHGPPKIPSSKEDWVLCRVFYKNREVAAKPSMDSCYDETGSSSLPALMDSYISFDQAQTNADEYEQVPCFSIFSHNQTNPIFNHINTMEPKLPANHATTYGGAPNLESCLDPFSCDNKVLKAVLSQLTRMERNQPNPCLKGSPSLGEGSSESYLSEVGMPNMWNNY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1210g00009 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 210 - -
Gabi1210g00009 302 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Gabi1210g00009 302 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Gabi1210g00009 302 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Gabi1210g00009 302 FunFam NAC domain-containing protein 100-like 20 162 - -
Gabi1210g00009 302 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1210g00009 Gabi-Chr1210 162364 167414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1210g00009 2 300 NAC Transcription Factor Family AT1G56010 61.442 4.92e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1210g00009 NAM 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1210g00009 - - gmx:100301890 538.495