Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1210g00007 ATGGCTTCTGAAAGGGTAAGCTCCGAAACAGTGGCGAAAGCCGTTGATTCTCTCCTGAAATGGAGGAACTCACAATCCGAAACCCAAAAGCCGAAGCTGTTCGACGAAGACGAGGAATTCGTGTATCTGATTCTCACTCTCAAAAAGATTCCCCAAAAGGGTCGAGTTAACCCTTACAAGATCCCTCTCCCTCACTCCCTCCTCTCTCCATTCTCCGAGCAGTGCTTGATCATCGACGACAGGCCCAAGGCCCAACTCACCAAAGCCCAAGCCCAGAACAAGATCCAGTCCGGGAGCATCCCTATCTCGAAGGTTCTGAAGCTCACGAAGCTCGCCTCCGATTACCGTCCCTTCGAGGCGAAGAGGAAGCTATGCAATTCTTACGACCTGTTTTTCGCTGACAAGAGGGTTGTTCCTTTGCTTCCGAGGTTGTTGGGGAAACAGTTCTTCAAGAAGAAGAAGGTTCCTGTTGCTTTGGATTTGAAGAAGAGTAATTGGAAGGAGCAGGTTCAGAAGGCTTGTTCTTCGGGGCTGTTGTCTCTGAGTACTGGGACTTGTAGTGTTGTTAGGGTTGCCAAGTTGAGTATGGAGAGGGATGATATCGTATCCAATGTTGTTGCTGCCATTGATGGGATAACTGAGGTTGTTCCTATAAAATGGTCTAATGTGAGGTCCTTTCATGTCAAGTTGTTAGAATCCCTCGCCTTGCCCGTTTATCAGACGGTTCCTGATGTGAAGTTGAAGATTGTGGGAATTAAGGAGAATGAGAGGAAAGAGAAAGAGGAAGAGGAAGAGGAGGAGGAAGCGGGTGAGGAGAAAGTGGGAAAGAAGAAGGGTAGGATTCATCAAGTTAAGTACATGGATGATAAAGTTGGTGAGGATCTCATTAAAGATGATGATGATGATGATGATGTTGTTGTGGAAGAAGATTCTGAGAATGATGAAAAGGGTAATGGAGAATTAGTGAATAAGAAGAGGAAGAAAGGAGTTAAAGTGATGAAGGGGGTTCTAAATGAGTTGACTAGTGTCAAACGGTTGAAAAAATCTGCTAAGGAAGGTGGCAAACAGAAGAAGGAGAGTTTGATGAAGAAAATTGAAGATAAATTATCTATTGATGATCTGGAGTCGGGCAACAAGAAGAAGAACAAGAAGAGAGTGGATGTTGAAGTAAAGGCTAAGAGAAGTAAGAGGGTTTTGTGA 1200 0.4475 MASERVSSETVAKAVDSLLKWRNSQSETQKPKLFDEDEEFVYLILTLKKIPQKGRVNPYKIPLPHSLLSPFSEQCLIIDDRPKAQLTKAQAQNKIQSGSIPISKVLKLTKLASDYRPFEAKRKLCNSYDLFFADKRVVPLLPRLLGKQFFKKKKVPVALDLKKSNWKEQVQKACSSGLLSLSTGTCSVVRVAKLSMERDDIVSNVVAAIDGITEVVPIKWSNVRSFHVKLLESLALPVYQTVPDVKLKIVGIKENERKEKEEEEEEEEAGEEKVGKKKGRIHQVKYMDDKVGEDLIKDDDDDDDVVVEEDSENDEKGNGELVNKKRKKGVKVMKGVLNELTSVKRLKKSAKEGGKQKKESLMKKIEDKLSIDDLESGNKKKNKKRVDVEVKAKRSKRVL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1210g00007 399 Gene3D - 83 176 IPR016095 -
Gabi1210g00007 399 MobiDBLite consensus disorder prediction 294 315 - -
Gabi1210g00007 399 Coils Coil 252 273 - -
Gabi1210g00007 399 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 13 233 - -
Gabi1210g00007 399 FunFam Ribosomal protein L1p/L10e family 84 175 - -
Gabi1210g00007 399 MobiDBLite consensus disorder prediction 370 399 - -
Gabi1210g00007 399 MobiDBLite consensus disorder prediction 292 322 - -
Gabi1210g00007 399 Pfam Ribosomal protein L1p/L10e family 32 233 IPR028364 -
Gabi1210g00007 399 CDD Ribosomal_L1 11 238 IPR028364 -
Gabi1210g00007 399 MobiDBLite consensus disorder prediction 256 279 - -
Gabi1210g00007 399 SUPERFAMILY Ribosomal protein L1 5 239 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1210g00007 Gabi-Chr1210 110403 112082 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1210g00007 127 229 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 29.126 9.39e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1210g00007 K14775 - gmx:100782862 438.728