Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi120g00001 ATGGAGCAACTGGGAAATCAACCTTCTTCTTCTTCAACAAAAGTTGAAAGAAGGGTCATAGAGAAAAACAGAAGAAACCATATGAAGATGCTTTACTCCAAACTCAACTCTCTTCTCCCTAACTTTAACCCCAAGGAAGCGTTACCATTACCTGACCAAGTAGATGAGGCAATCAACTACATAAAGATCCTAGAAGAGAAGGTGAAGATGGCTCAAGAGAAGAAAGAGAGCTTAGGGGGGAAGAAGAGATCACGTGATTGCTGCTCTAGTTCTTTTGCTACAACTAGCTGCACAAAATCGCCACAACTTGAAGTTCACGAAATGGGTTCTTCTCTAGAACTTGTTCTGACTTGTGGGTTAGAAACCCAGTTCATTTTCTATGAAATCATTCGCATGCTTCATGAGGAGAACATAGAGGTCAAGAGTGCCAATTCCTCACTGGCCGGTGATTCAATGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTATCTTCAGTTTGGAGCTACCAAAGTAAGCGAGAGATTGAAGAGGTTTGTGAATGGATCCTCTAGTGATATGGAAATACCGCTCGATTGGAGGGATTTTGAAATCGATACTAGTTTGTGGGGCTTCTAG 618 0.4191 MEQLGNQPSSSSTKVERRVIEKNRRNHMKMLYSKLNSLLPNFNPKEALPLPDQVDEAINYIKILEEKVKMAQEKKESLGGKKRSRDCCSSSFATTSCTKSPQLEVHEMGSSLELVLTCGLETQFIFYEIIRMLHEENIEVKSANSSLAGDSMLHVVHAEIPQSYLQFGATKVSERLKRFVNGSSSDMEIPLDWRDFEIDTSLWGF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi120g00001 205 Gene3D - 5 90 IPR036638 GO:0046983
Gabi120g00001 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 82 IPR036638 GO:0046983
Gabi120g00001 205 Coils Coil 54 81 - -
Gabi120g00001 205 Pfam Helix-loop-helix DNA-binding domain 15 64 IPR011598 GO:0046983
Gabi120g00001 205 MobiDBLite consensus disorder prediction 75 95 - -
Gabi120g00001 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Gabi120g00001 205 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 180 - -
Gabi120g00001 205 SMART finulus 18 70 IPR011598 GO:0046983
Gabi120g00001 205 FunFam Transcription factor bHLH162 5 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi120g00001 Gabi-Chr120 39099 40025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi120g00001 7 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.624 6.14e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi120g00001 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi120g00001 - - gmx:100817883 292.352