Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1209g00011 ATGATGCAAAGCAGTGGACAATTAACAGTTCCCCCAGGCTTCAGATTCCACCCTACTGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAGGTTTCTTATGAAGCCATTGATCTTGATGTCATAAGAGAAGTAGATCTGAACAAACTTGAGCCTTGGGACCTCAAAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAAGCCATATACCACAGTAATTCTAAGAGGATTGGAATGAGGAAAACCCTAGTCTTTTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGAGGTTCAGGAAGATGGGTGGGTGGTTTGCAGGGTTTTCAAAAAGAAAAGCCAAAATAGAGGTTTCCAACAAGAAATTGAAGAAGAAGAGCACTTAACCCACATGAGAACAAGTGGTCCTTGCCAGATTCTAGAGCCAAAACATCACATGCAAGGACTCTATGATTACAGCTTTGATGGGTCAATGCACCTGCCACAGTTGTTCAGTCCGGAATCAGTTGTAGCACCCACTTCCCTGTCCTCACCCATGAACGCCATGGACATCCTTGAATGCTCTCAAAACTTGTTGAGGCTCACAACTACCACTACTAATGGCTGTGGACTTAATCTCATGCCACAACAAGGAGAGAGGTTCAATGGTGATTGGTCCTTCTTGGACAAGCTACTAGCATCCCACCATGGCATGGATCAACATCCACAAAGCAAAAGTAACCATCCCACTCAACAGGCTGCAGCTGCTGTAGGCACTTCAGCTCTGAAATTTCCATTTCATTACCTTGGCTGTGACACCCATGATATTATGAAATATTCCAAGTAG 969 0.4407 MMQSSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDAEVQEDGWVVCRVFKKKSQNRGFQQEIEEEEHLTHMRTSGPCQILEPKHHMQGLYDYSFDGSMHLPQLFSPESVVAPTSLSSPMNAMDILECSQNLLRLTTTTTNGCGLNLMPQQGERFNGDWSFLDKLLASHHGMDQHPQSKSNHPTQQAAAAVGTSALKFPFHYLGCDTHDIMKYSK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1209g00011 322 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 243 - -
Gabi1209g00011 322 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Gabi1209g00011 322 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Gabi1209g00011 322 FunFam NAC domain-containing protein 19 163 - -
Gabi1209g00011 322 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Gabi1209g00011 322 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1209g00011 Gabi-Chr1209 181798 183495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1209g00011 2 322 NAC Transcription Factor Family AT1G79580 53.403 1.20e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1209g00011 NAM 2.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1209g00011 - - vun:114178728 585.489