Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1206g00018 ATGGGGAAGGGAGGTGAGAATTACGTGAACCACACGAACGCGAGTTCGGAGAGGGAAATGTTTAAGGTTTGGGCCAAGAGTGTTACCGAATGCGAAGAGCATTTTAAGGTGACAGTGAAAAAAGGCTTAAGTCACGACGAGGTTGAGAAACGGCGTCGTATTTATGGTTACAACGAGTTGGACAATCACGAGGGACAATCGATATGGAGCCTCGTTATCGATCAGTTCAACGACACTTTGGTTCGGATCCTCCTCTTCGCCGCCGTCGTTTCCTTCATCCTCGCCTGGTTAGACGGCGAGGAAGGAAGCGACATGGAGATCACGGCCTTCGTGGAGCCTCTTGTCATATTCCTCATACTCATCGTCAACGCCATTGTTGGTGTCTGGCAAGAGAGCAATGCCGAGAAAGCACTCGAGGCTTTGAAGGAGATTCAATCCGAGCACGCAGCCGTCGTTCGCGGCGGCAGGTGGATCCCGAGCGTGCCGGCGAAGGAACTCGTCCCCGGCGATGTTGTGGAGCTTAAGGTTGGTGATAAGGTCCCTGCTGATATGCGTGTTGTGGAGTTAATTAGCTCCACTCTGCGTCTCGAACAGGGTTCCCTCACAGGGGAGAGTGAAGCAGTGATTAAGACAAACAAGGTTGTTCCCGAGGATGCTGATATTCAAGCCAAGAAGTGTATGGTTTTCGCGGGGACAACGGTTGTTAACGGCCATTGCTATTGTTTGGTTACACAAACAGGAATGGAAACAGAGATTGGGAAAGTGCACAAGCAGATACACGTGGCGGCGCTGAGTGTGGAAGATACACCTCTTAAGAAGAAGCTCAATGAGTTCGGGGAGTTGTTAACTCGGATAATTGGTGTGGTGTGTGCTTTGGTGTGGGTCATCAATATTAAGTATTTTCTGAACTGGGATTATGTGAATGGGTGGCCAAGTAACTTCAAGTTTTCGTTTGAGAAGTGCACTTATTACTTTGAGATTGCTGTTGCATTGGCCGTGGCTGCTATTCCTGAAGGTTTACCTGCGGTTATTACTACTTGTTTGGCGCTTGGTACTCGCAAGATGGCTGCTAAGAATGCCCTTGTTCGGAAGCTAACAAGTGTGGAAACTCTTGGTTGTACAACTGTGATTTGTTCGGATAAAACGGGTACATTGACAACAAATCAGATGGCTGTGACAAAACTTGTGGCTATTGGGTCTAAAGTAGACACACTGCAATCCTTCAAGGTGGAAGGAACTACTTATAATCCATCTGATGGTAAGATAGAGGACTGGCCAATGGGTCAATTGGATGCTAATCTTGAGATGATAGCCAAAATCGCTGCCATTTGTAATGATGCTGGATTAGAAGAGGCAGAACAGAAGTTTGTTGCTCATGGAATTCCAACTGAAGCAGCCTTAAAGGTTCTGGTGGAGAAGATGGGCCTTCCTGAAGGATCCAGTGGTGCATGTTCACCAAGAAGTGCCTTACTACGTTGTTGTAATTGGTGGAATAAAAGTGACCGTCGGATTGCTACTCTTGAGTTTGACCATGATAGGAAGTCAATGGGTGTTATTGTGGACTCAGGTGAAGGGAAAAAGTCACTGCTGGTGAAGGGTGCTGTAGAAAATGTGTTGGAAAGAAGCACCAAAATGCAGTTGTCTGATGGTACTATTGTGAAATTGGACGATGATGGTAGGAACCTTGTATTGCAAGCTCTTCTTGAAATGTCAACTAGTGCATTGCGCTGTTTGGGATTTGCATACAAGGACGAGCTCCCTATGTTTGAAAGCTACAGCGGCAATGATGATCATCCAGCTCACCAGCTTTTGCTTAATCCTTCTAACTATTCATCAATTGAAACTGAACTTATTTTTATTGGCCTGGCTGGTTTAAGGGATCCTCCTAGGGAGGAGGTACACCAAGCACTTGAGGACTGTAGAGCAGCTGGAATTAGAGTTTTGGTTATAACTGGAGATAACAAGGAAACAGCAGAAGCTATATGCCATGAAATAGGTGTATTTGGACCCAATGAAGACATAAGCTCGAGAAGCATAACGGGAAAACAGTTTATGGAGCTGCGTGATAAAAAAGCTCATCTGGATCAGAGTGGAGGGCTTTTATTTTCAAGAGCTGAACCTAGACACAAGCAAGAAATTGTGAAGCTGCTCAAAGAGGATGGAGAAGTAGTGGCCATGACTGGAGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCTGATATTGGCATTGCAATGGGAATTACAGGGACTGAGGTGGCAAAGGAAGCTTCGGATATGGTTTTGGCTGATGATAATTTTAATACGATTGTTGCTGCTGTGGGTGAAGGTAGATCTATCTACAGTAACATGAAGGCTTTTATCAGGTATATGATATCTTCCAATATTGGGGAGGTTGCTTCTATATTTCTAACGGCTGCCCTAGGTATTCCTGAAGGTTTGCTACCTGTTCAGCTTCTGTGGGTCAATCTTGTCACAGATGGACCACCAGCAACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCCCAAAAATGACGCACTAATTAGTTGGTGGATTTTATTCCGCTATCTGGTTATTGGGATGTATGTTGGAATAGCCACAGTTGGTGTTTTCATTATATGGTATACACATGGTTCCTTCTTGGGTATTGATCTTACTGGGGATGGTCATACTCTTGTTACTTACTCCCAACTTTCCAACTGGGGTCAATGCTCCAAATGGGAGAATTTCACTGCTTCTCCTTTCACTGCTGGTGATAGAGTTTTCTCATTTGATAATGACCCTTGTGAATATTTCCGAGCTGGGAAAGTGAAAGCTATGACTCTCTCCCTCTCTGTGTTGGTAGCCATTGAAATGTTCAATTCCCTTAATGCCCTTTCTGAGGATGGAAGCCTTTTGACAATGCCTCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCTGTGTCATTTGGTCTTCACTTTTTGATCTTGTATGTGCCATTCTTAGCTCAAATATTTGGCATTGTTCCCCTGAGCTTCAGAGAATGGCTTTTGGTTTTGGTTGTTGCATCCCCTGTTGTTCTAATTGATGAGATTCTGAAATTTGTGGGGAGGTGTACAAGGTGGTACCAAAAATCTCCGGCAAGAAGATCAAAGCAAAAATCAGAGTAA 3177 0.4485 MGKGGENYVNHTNASSEREMFKVWAKSVTECEEHFKVTVKKGLSHDEVEKRRRIYGYNELDNHEGQSIWSLVIDQFNDTLVRILLFAAVVSFILAWLDGEEGSDMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHAAVVRGGRWIPSVPAKELVPGDVVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVIKTNKVVPEDADIQAKKCMVFAGTTVVNGHCYCLVTQTGMETEIGKVHKQIHVAALSVEDTPLKKKLNEFGELLTRIIGVVCALVWVINIKYFLNWDYVNGWPSNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAAKNALVRKLTSVETLGCTTVICSDKTGTLTTNQMAVTKLVAIGSKVDTLQSFKVEGTTYNPSDGKIEDWPMGQLDANLEMIAKIAAICNDAGLEEAEQKFVAHGIPTEAALKVLVEKMGLPEGSSGACSPRSALLRCCNWWNKSDRRIATLEFDHDRKSMGVIVDSGEGKKSLLVKGAVENVLERSTKMQLSDGTIVKLDDDGRNLVLQALLEMSTSALRCLGFAYKDELPMFESYSGNDDHPAHQLLLNPSNYSSIETELIFIGLAGLRDPPREEVHQALEDCRAAGIRVLVITGDNKETAEAICHEIGVFGPNEDISSRSITGKQFMELRDKKAHLDQSGGLLFSRAEPRHKQEIVKLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFNTIVAAVGEGRSIYSNMKAFIRYMISSNIGEVASIFLTAALGIPEGLLPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRPKNDALISWWILFRYLVIGMYVGIATVGVFIIWYTHGSFLGIDLTGDGHTLVTYSQLSNWGQCSKWENFTASPFTAGDRVFSFDNDPCEYFRAGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFREWLLVLVVASPVVLIDEILKFVGRCTRWYQKSPARRSKQKSE 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1206g00018 1058 SUPERFAMILY Calcium ATPase, transmembrane domain M 21 1041 IPR023298 -
Gabi1206g00018 1058 PRINTS P-type cation-transporting ATPase superfamily signature 621 632 - -
Gabi1206g00018 1058 PRINTS P-type cation-transporting ATPase superfamily signature 197 211 - -
Gabi1206g00018 1058 PRINTS P-type cation-transporting ATPase superfamily signature 378 392 - -
Gabi1206g00018 1058 PRINTS P-type cation-transporting ATPase superfamily signature 643 653 - -
Gabi1206g00018 1058 PRINTS P-type cation-transporting ATPase superfamily signature 727 746 - -
Gabi1206g00018 1058 PRINTS P-type cation-transporting ATPase superfamily signature 751 763 - -
Gabi1206g00018 1058 SFLD C1.7: P-type atpase like 359 779 - -
Gabi1206g00018 1058 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 385 625 IPR023299 GO:0000166
Gabi1206g00018 1058 Gene3D - 375 772 IPR023214 -
Gabi1206g00018 1058 PANTHER CALCIUM-TRANSPORTING ATPASE 24 1045 - -
Gabi1206g00018 1058 SUPERFAMILY HAD-like 376 831 IPR036412 -
Gabi1206g00018 1058 Pfam Cation transport ATPase (P-type) 443 544 - -
Gabi1206g00018 1058 Pfam E1-E2 ATPase 144 358 - -
Gabi1206g00018 1058 ProSitePatterns E1-E2 ATPases phosphorylation site. 380 386 IPR018303 -
Gabi1206g00018 1058 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 388 628 - -
Gabi1206g00018 1058 SFLD p-type atpase 359 779 IPR044492 -
Gabi1206g00018 1058 Pfam Cation transporting ATPase, C-terminus 812 1038 IPR006068 -
Gabi1206g00018 1058 SUPERFAMILY Calcium ATPase, transduction domain A 147 258 IPR008250 -
Gabi1206g00018 1058 FunFam Calcium-transporting ATPase, putative 124 260 - -
Gabi1206g00018 1058 NCBIfam HAD-IC family P-type ATPase 317 400 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1206g00018 1058 NCBIfam HAD-IC family P-type ATPase 115 219 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1206g00018 1058 NCBIfam HAD-IC family P-type ATPase 701 808 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1206g00018 1058 Pfam haloacid dehalogenase-like hydrolase 624 741 - -
Gabi1206g00018 1058 Gene3D - 74 1040 - -
Gabi1206g00018 1058 Pfam Cation transporter/ATPase, N-terminus 24 91 IPR004014 -
Gabi1206g00018 1058 SMART Cation_ATPase_N_a_2 22 96 IPR004014 -
Gabi1206g00018 1058 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 791 1046 - -
Gabi1206g00018 1058 FunFam Calcium-transporting P-type ATPase, putative 623 772 - -
Gabi1206g00018 1058 Gene3D - 388 628 IPR023299 GO:0000166
Gabi1206g00018 1058 Gene3D - 41 262 - -
Gabi1206g00018 1058 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 249 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1206g00018 Gabi-Chr1206 169322 173997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1206g00018 1 1058 Primary Pumps ATPases(2) AT1G07670 76.460 0.0 1669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1206g00018 K01537 - gmx:100788807 1764.2