Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1206g00012 ATGTGCATAAAAAGCAACATTCCTACTTACATAGTTCACAATCTAAAAAGCCGAAGTCCCAAGCACATGATCCCACAATCAATGGAAGAAACAACAGCAACCATCATGGCTGCACTCTCCACCTTCACTCCTTCCCATTTATCAGATCTCACTCACTCCATTCTCTCAGCCACCCACCACCACCACCGTCGCCTCTCCTTCCTCCTCTCTTCCCCAACTCTTTTCTCCCTAACCCTTCATCACCTTCACACTCTCTCTCTTCCCCAAAAGACTCTTCTCATTGCCCGCCACCTCCTCTCATCTCTCCACCGCCTCACCCGCCACATCCAACCGGAAAACAGAACATCACCGCCGCCTCCGCCGCCGTTATCCACCACCATCAGACAGCGCGATCTCGATGCTGTTTTGCTGCTCCTCTTGCTCTGCGAGACCCACAACCACAACCCAGAAGCTCTAGAGGGACCCTCTTCTGATTGGAGGGTGAACTTGAGCAAGCTTTTCTCTGATGAATTGTTGGTGCTTTCTTCTTCTTCTGTGCCCGTTGGGGCATGTTCAGGGACAACCTTGATTCCCTTCGTTGAGATGGTGAGCCGGTGTTGGAGACTCGTGGGTGCACTTGGTTGTGGCGGCGGCGGTGGTGGGAAGGAAGTTGGGGAGGTGGCGGCGTCTGCGGCGGCGGTGGTGGCGCTGCCGTCGGTGGAGGTGATGTTGGGTGGGAGAGAGTGTGTGATATGCAAAGAGGAGATGAGAGTCGGAAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTCCATTGGATGTGCTTATTGCCGTGGCTGGGGAAGAGGAACACGTGTCCTTGTTGCAGGTTCAGGCTGCCGTCCGATGACGTTTTCGGAGAGATCCAACGGCTGTGGGAAGTTTTGGTTAAAATAAGTGGAAAAGAATAA 930 0.5344 MCIKSNIPTYIVHNLKSRSPKHMIPQSMEETTATIMAALSTFTPSHLSDLTHSILSATHHHHRRLSFLLSSPTLFSLTLHHLHTLSLPQKTLLIARHLLSSLHRLTRHIQPENRTSPPPPPPLSTTIRQRDLDAVLLLLLLCETHNHNPEALEGPSSDWRVNLSKLFSDELLVLSSSSVPVGACSGTTLIPFVEMVSRCWRLVGALGCGGGGGGKEVGEVAASAAAVVALPSVEVMLGGRECVICKEEMRVGRDVCELPCQHLFHWMCLLPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKISGKE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1206g00012 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 294 IPR013083 -
Gabi1206g00012 309 CDD RING-H2_PA-TM-RING 241 283 - -
Gabi1206g00012 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 149 287 - -
Gabi1206g00012 309 SMART ring_2 242 282 IPR001841 -
Gabi1206g00012 309 ProSiteProfiles Zinc finger RING-type profile. 242 283 IPR001841 -
Gabi1206g00012 309 Pfam Ring finger domain 241 283 IPR001841 -
Gabi1206g00012 309 SUPERFAMILY RING/U-box 236 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1206g00012 Gabi-Chr1206 130350 131998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1206g00012 29 306 C3H Transcription Factor Family AT5G02750 48.432 3.18e-82 248