Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1206g00006 ATGGGTTGGATTCCTTGTTCTGGAAATTCAAACACTAAGAAGAAGATTAAGAAGAAGAAGAAGTTGGAAGTGCACGATCCGATCAAAGCTACCCCGCCAGGGAAATTGAAGAGGAATTCATCTATAAATTCCAAAGATTCCTCTAAAAGTGGAAACCTTGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAACTTTAGAGCAGAATGTCTTTTAGGCGAGGGAGGCTTTGGCAGAGTATACAAAGGGCGTCTGGAAAATATTAATCAGATTGTTGCAATTAAGCAACTTGACCGAAATGGGCTGCAAGGGAATAGAGAATTCCTCGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAGTATATGTCATTAGGATCCTTGGAAGACCACTTATATGATATTTCTCCTGGCAAGAAACGACTTGACTGGAACACACGAATGAAAATTGCTGCTGGGGCAGCAAGGGGATTGGAATATCTACATGACACAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTACTTGACGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTGGGGGAGAACACCCATGTATCCACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTCTAAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGTTTCATTCGCTTACTAATGGTCAAAAAGTTGTCAGTGTGGATTAA 918 0.4118 MGWIPCSGNSNTKKKIKKKKKLEVHDPIKATPPGKLKRNSSINSKDSSKSGNLDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLYDISPGKKRLDWNTRMKIAAGAARGLEYLHDTANPPVIYRDLKCSNILLDEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWFHSLTNGQKVVSVD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1206g00006 305 Gene3D Transferase(Phosphotransferase) domain 1 150 304 - -
Gabi1206g00006 305 FunFam Serine/threonine-protein kinase PBS1 150 304 - -
Gabi1206g00006 305 ProSiteProfiles Protein kinase domain profile. 73 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00006 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Gabi1206g00006 305 MobiDBLite consensus disorder prediction 36 51 - -
Gabi1206g00006 305 MobiDBLite consensus disorder prediction 1 51 - -
Gabi1206g00006 305 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Gabi1206g00006 305 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Gabi1206g00006 305 Pfam Protein kinase domain 77 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00006 305 PANTHER OS07G0668900 PROTEIN 20 300 - -
Gabi1206g00006 305 SUPERFAMILY Protein kinase-like (PK-like) 59 287 IPR011009 -
Gabi1206g00006 305 FunFam Serine/threonine-protein kinase PBS1 45 149 - -
Gabi1206g00006 305 SMART serkin_6 73 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00006 305 CDD STKc_IRAK 79 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1206g00006 Gabi-Chr1206 41791 45466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1206g00006 33 291 Glycoside Hydrolase AT3G07070 72.973 6.53e-139 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi1206g00006 Pkinase 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1206g00006 - - gmx:100776041 535.798