Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1206g00005 ATGGGTTGGATTCCTTGTTCTGGAAATTCAAACACTAAGAAGAAGATTAAGAAGAAGAAGAATGCAGGGAAATTGAAGAGGAATTCATCTATAAATTCCAAAGATTCCTCTAAAAGTGGAAACCTTGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAACTTTAGAGCAGAATGTCTTTTAGGCGAGGGAGGCTTTGGCAGAGTATACAAAGGGCGTCTGGAAAATATTAATCAGATTGTTGCAATTAAGCAACTTGACCGAAATGGGCTGCAAGGGAATAGAGAATTCCTCGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAGTATATGTCATTAGGATCCTTGGAAGACCACTTATATGATATTTCTCCTGGCAAGAAACGACTTGACTGGAACACACGAATGAAAATTGCTGCTGGGGCAGCAAGGGGATTGGAATATCTACATGACACAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTACTTGACGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTGGGGGAGAACACCCATGTATCCACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTCTAAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGATCGAAGAAAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCAAGAGGGTTATATCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGAGTTACCTTGCTTCACAAAGATATGACCCCAATACACAGACAGTACAAAGCTCTCGCCTTACTCTTGGTACTCCTCCTAGAACCAAGAGGGGACAGTGA 1107 0.4201 MGWIPCSGNSNTKKKIKKKKNAGKLKRNSSINSKDSSKSGNLDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLYDISPGKKRLDWNTRMKIAAGAARGLEYLHDTANPPVIYRDLKCSNILLDEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPNTQTVQSSRLTLGTPPRTKRGQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1206g00005 368 PIRSF ILK 10 350 - -
Gabi1206g00005 368 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Gabi1206g00005 368 Gene3D Transferase(Phosphotransferase) domain 1 139 358 - -
Gabi1206g00005 368 Gene3D Phosphorylase Kinase; domain 1 31 138 - -
Gabi1206g00005 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Gabi1206g00005 368 FunFam Serine/threonine-protein kinase PBS1 34 138 - -
Gabi1206g00005 368 CDD STKc_IRAK 68 336 - -
Gabi1206g00005 368 PANTHER OS07G0668900 PROTEIN 14 348 - -
Gabi1206g00005 368 MobiDBLite consensus disorder prediction 1 39 - -
Gabi1206g00005 368 Pfam Protein kinase domain 66 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00005 368 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00005 368 SUPERFAMILY Protein kinase-like (PK-like) 43 336 IPR011009 -
Gabi1206g00005 368 SMART serkin_6 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00005 368 FunFam Serine/threonine-protein kinase PBS1 139 354 - -
Gabi1206g00005 368 MobiDBLite consensus disorder prediction 349 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1206g00005 Gabi-Chr1206 41791 45751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1206g00005 7 341 Glycoside Hydrolase AT3G07070 67.164 3.80e-168 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi1206g00005 Pkinase 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1206g00005 - - gmx:100776041 676.011