Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1206g00004 ATGGGTTGGATTCCTTGTTCTGGAAATTCAAACACTAAGAAGAAGATTAAGAAGAAGAAGAAGTTGGAACCTTTGGAATTGAGTGCAGGGAAATTGAAGAGGAATTCATCTATAAATTCCAAAGATTCCTCTAAAAGTGGAAACCTTGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAACTTTAGAGCAGAATGTCTTTTAGGCGAGGGAGGCTTTGGCAGAGTATACAAAGGGCGTCTGGAAAATATTAATCAGATTGTTGCAATTAAGCAACTTGACCGAAATGGGCTGCAAGGGAATAGAGAATTCCTCGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAGTATATGTCATTAGGATCCTTGGAAGACCACTTATATGATATTTCTCCTGGCAAGAAACGACTTGACTGGAACACACGAATGAAAATTGCTGCTGGGGCAGCAAGGGGATTGGAATATCTACATGACACAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTACTTGACGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTGGGGGAGAACACCCATGTATCCACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTCTAAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGATCGAAGAAAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCAAGAGGGTTATATCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGAGTTACCTTGCTTCACAAAGATATGACCCCAATACACAGACAGTACAAAGCTCTCGCCTTACTCTTGGTACTCCTCCTAGAACCAAGAGGGGACAGTGA 1128 0.4202 MGWIPCSGNSNTKKKIKKKKKLEPLELSAGKLKRNSSINSKDSSKSGNLDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLYDISPGKKRLDWNTRMKIAAGAARGLEYLHDTANPPVIYRDLKCSNILLDEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPNTQTVQSSRLTLGTPPRTKRGQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1206g00004 375 Gene3D Transferase(Phosphotransferase) domain 1 146 365 - -
Gabi1206g00004 375 PANTHER OS07G0668900 PROTEIN 17 355 - -
Gabi1206g00004 375 Pfam Protein kinase domain 73 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00004 375 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gabi1206g00004 375 SUPERFAMILY Protein kinase-like (PK-like) 50 343 IPR011009 -
Gabi1206g00004 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Gabi1206g00004 375 MobiDBLite consensus disorder prediction 1 21 - -
Gabi1206g00004 375 FunFam Serine/threonine-protein kinase PBS1 41 145 - -
Gabi1206g00004 375 FunFam Serine/threonine-protein kinase PBS1 146 361 - -
Gabi1206g00004 375 CDD STKc_IRAK 75 343 - -
Gabi1206g00004 375 Gene3D Phosphorylase Kinase; domain 1 38 145 - -
Gabi1206g00004 375 ProSiteProfiles Protein kinase domain profile. 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1206g00004 375 MobiDBLite consensus disorder prediction 356 375 - -
Gabi1206g00004 375 SMART serkin_6 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1206g00004 Gabi-Chr1206 41791 45751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1206g00004 39 348 Glycoside Hydrolase AT3G07070 70.968 1.39e-166 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi1206g00004 Pkinase 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1206g00004 - - gmx:100776041 685.256