Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1206g00001 ATGACAGGGGGCGTACAGATGAGTATTGATGGTGACGACAAAGAGCTGAAAGAACTGACTAAAGACGGAGTTGCTGGTGAGAAGCGCTGTTTATGTGAGGATAATGAAGTGAAATGTAATGGATTATCTCAAGAAGTTAAGGTTGGACAGGGGGGGACTGTGGAATCCTCTTCGGTTCAGCAGCATATATCACAGCAACAGCCTCAAGGGTCAATGATTTGTTGGGAGAGGTTTTTACATATTAGATCTCTTAAGGTCTTGCTTGTGGAATATGATGACTCTACCCGCCTAGTTGTGAATGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCACCAAACGGATTGCATGCTTGGAAGATATTAGAGGATTTAACCAATCATATTGATCTCATTTTGACTGAGGTAGCAATGCCTGGCTTATCAGGCATTGGTCTTCTATACAAGATTATGGGCCACAAAACACGGAAAAATATTCCAGTTATTATGATGTCTTCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTTTGGCAGCATGTTTGGAGGAGATGCCATAGTTCTAGCGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAATCAAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGATGAGTATGATAATGGAAGTGAAGGCTTGAATAATGGTGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCCTGGACCAAAAGAGCTGTAGAAGTTGAAAGTCCCAAGCCAGTTTCCCAGTGGGATCAAATAGCTGAGTGCCCGGACAGCACTTGTGCTCAAGTTGTTCACTCCAATGCTGAAATATGCAGGAACAATGTGGTTCTCCTATCCACAAAGGAGTGTCCAGAACAAAAGGAACAACTTAATGAAAGCTGACTCATTAGAGATATTGACTTTATGGTAGACGACTATATAAATGGGGTTCCAGTCAAAACTGCAGGTTCAAAACATAGCAACGCACTTGATGTAGGCCCCTCTAAATTCAATGAGCAAATTAATAGAGGACAGCTGGACCTTAATTGTGAGAATCAATCGAACAAGCTAAGATGCAAAGGTCTTTCATTGTCTGATGCCATTACTAGCACTTCTGAGTTTCAGATGCGTGGCGGAGAATTTGAAGCCCTAAATGGAAGACCCAAGTCCTCAGGTATTGAACACAAAGGTGCTAATAATTATGAAGAATTGCCATCTCTTGAGCTCAGTTTAAAGAGGCTTAGAGGAGTTAAAGATGCTGGTATTGCAGTTCAGGATGAAAGGAATGTTTTAAGACGTTCTGATCTGTCTGCTTTCTCGAGGTACAATGCAGTCCCTAACACTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTTTCCACATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCGTGGCATTCAATCTCATTCCAGGGGCAATCCTCCTAACCAGAACTCAAATGGGGCTAGCAACAACAATGATATGGGTTCTACTACTAATAATGCTTTTACTAAATCTGCAGTTGTAAGTGAGCCGGCAGTGGCATCAACAACCAAATGTTTGTACCAAACCTCTGCTTTCCAGTCCATAAAGAACAGCCTTGTGTGTACTTCCAAACAAGTTGTCTTACATAATACTGAAGATACGACAGCAACAATGCTGGCACCACCTAGAGTAAACACCCACAAGGATTATGCAAGTCAGGACTTCCATCACCATTATGAAAATCGTAACTGTATTGCTGACGACATGCAGCACCAACTGGCACCTGATCATGATGCTGAATCTTTGAACAAAATGGCTGCTGCTGCTCCACATTGTGGGTCATCAAATGTGGTTGAAGGTAATATTGAAAATTACAGTATCAATAGAAGTGCTTCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCGCTGCAGTTAATGCTAGTGGGACAATAATAGAAAGCAACAATGGACTCGCTGGGAATAGTGGCAGTGGTGATGCAAGTGGGACTGGAAGTGCCAGCAGGACAGATCAAAACAAGAGTTTGCAAAGGGAAGCAGCCTTAACTAAATTTCGCCAGAAGAGAAAGGAGAGAAAGGAGAGGTGCTTTCATAAACAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGACCAACGACCCCGATTTCGTGGACAATTTGTGCGACAGTCCTCAAACGAAGATGCAAGTGATGCAACAGATAGCTGA 2307 0.4218 MTGGVQMSIDGDDKELKELTKDGVAGEKRCLCEDNEVKCNGLSQEVKVGQGGTVESSSVQQHISQQQPQGSMICWERFLHIRSLKVLLVEYDDSTRLVVNALLRNCSYEVIEAPNGLHAWKILEDLTNHIDLILTEVAMPGLSGIGLLYKIMGHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSDNNSGSNDEYDNGSEGLNNGDGSDNGSGTQSSWTKRAVEVESPKPVSQWDQIAECPDSTCAQVVHSNAEICRNNVVLLSTKECPEQKEQLNESXLIRDIDFMVDDYINGVPVKTAGSKHSNALDVGPSKFNEQINRGQLDLNCENQSNKLRCKGLSLSDAITSTSEFQMRGGEFEALNGRPKSSGIEHKGANNYEELPSLELSLKRLRGVKDAGIAVQDERNVLRRSDLSAFSRYNAVPNTKKSPTGCVGSNFPHNNSLEVTKKDSSRGIQSHSRGNPPNQNSNGASNNNDMGSTTNNAFTKSAVVSEPAVASTTKCLYQTSAFQSIKNSLVCTSKQVVLHNTEDTTATMLAPPRVNTHKDYASQDFHHHYENRNCIADDMQHQLAPDHDAESLNKMAAAAPHCGSSNVVEGNIENYSINRSASGSNNGSNGQNGSSAAVNASGTIIESNNGLAGNSGSGDASGTGSASRTDQNKSLQREAALTKFRQKRKERKERCFHKQVRYQSRKKLADQRPRFRGQFVRQSSNEDASDATDS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 238 269 - -
Gabi1206g00001 768 Gene3D - 83 238 - -
Gabi1206g00001 768 SMART REC_2 84 199 IPR001789 GO:0000160
Gabi1206g00001 768 Pfam CCT motif 711 756 IPR010402 GO:0005515
Gabi1206g00001 768 CDD psREC_PRR 86 189 - -
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 209 274 - -
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 751 768 - -
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 651 768 - -
Gabi1206g00001 768 PANTHER TWO-COMPONENT RESPONSE REGULATOR 84 276 IPR045279 GO:0009736
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 209 225 - -
Gabi1206g00001 768 ProSiteProfiles CCT domain profile. 714 756 IPR010402 GO:0005515
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 472 532 - -
Gabi1206g00001 768 SUPERFAMILY CheY-like 82 208 IPR011006 -
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 721 736 - -
Gabi1206g00001 768 FunFam Two-component response regulator-like PRR37 84 242 - -
Gabi1206g00001 768 ProSiteProfiles Response regulatory domain profile. 85 203 IPR001789 GO:0000160
Gabi1206g00001 768 Pfam Response regulator receiver domain 86 197 IPR001789 GO:0000160
Gabi1206g00001 768 MobiDBLite consensus disorder prediction 651 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1206g00001 Gabi-Chr1206 5889 20382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1206g00001 160 758 Response Regulator Gene Family AT5G02810 46.486 3.73e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gabi1206g00001 Response_reg 8.6e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1206g00001 K12129 - gmx:100796933 1099.35