Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1201g00006 | ATGGCGGTTCCGGGGAGGCGCAATGGCCTGAACAACGAGGAGGATGAAGAAGAAGACAACGCCCTTTTTGAAGAAGAAGGTATCCTCGAAGACACCGATACTCCTCCTCATCTTCGTGACCTTTCCGCCGCTGCTCAGCGCGGCGACCTCCACGCCCTCCGCCTCGCTCTAGATAACTTGACTGGTAGTATCAATGAGCCAGTGGAGGATGGGGATACAGCTCTTCATTTGACCTGTTTATATGGCCATTTGGCATGTGTCCAGCTGCTCCTAGAAAGAGGAGCGGACTTGGAGGCTAAGGATGAAGATGGTGCAATTCCTTTACATGATGCTTGTGCAGGAGGATTTACAGAGATAGTCCAACTGCTAATTAACAGAGCTAATGACTCAGATCATATAAAAAGGATGCTAGAATCAGTTGATGCTGAGGGTGATACTCCACTCCATCATGCTGCAAGAGGTGAGCATGTTAATGTAATTAGGTTGTTGCTGTCTTATGGCGCGTCTTCCACAAAGACAAACTTATATGGAAAGACTCCAACAGAGTTACCTGAGCAGGACACGGATGCTAGGAGGCTGCTCGAAGCTGCCGCTACTGCAATGGCATGCTAA | 612 | 0.4902 | MAVPGRRNGLNNEEDEEEDNALFEEEGILEDTDTPPHLRDLSAAAQRGDLHALRLALDNLTGSINEPVEDGDTALHLTCLYGHLACVQLLLERGADLEAKDEDGAIPLHDACAGGFTEIVQLLINRANDSDHIKRMLESVDAEGDTPLHHAARGEHVNVIRLLLSYGASSTKTNLYGKTPTELPEQDTDARRLLEAAATAMAC | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1201g00006 | 203 | PANTHER | SOWAH (DROSOPHILA) HOMOLOG | 12 | 199 | - | - | |
| Gabi1201g00006 | 203 | ProSiteProfiles | Ankyrin repeat region circular profile. | 70 | 102 | - | - | |
| Gabi1201g00006 | 203 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Gabi1201g00006 | 203 | ProSiteProfiles | Ankyrin repeat profile. | 103 | 135 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | Gene3D | - | 10 | 104 | IPR036770 | - | |
| Gabi1201g00006 | 203 | ProSiteProfiles | Ankyrin repeat region circular profile. | 103 | 131 | - | - | |
| Gabi1201g00006 | 203 | ProSiteProfiles | Ankyrin repeat region circular profile. | 143 | 169 | - | - | |
| Gabi1201g00006 | 203 | Pfam | Ankyrin repeats (3 copies) | 103 | 173 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | Pfam | Ankyrin repeats (3 copies) | 41 | 101 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | ProSiteProfiles | Ankyrin repeat profile. | 70 | 102 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | ProSiteProfiles | Ankyrin repeat profile. | 143 | 175 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | FunFam | BRCA1-associated RING domain protein 1 | 35 | 202 | - | - | |
| Gabi1201g00006 | 203 | SUPERFAMILY | Ankyrin repeat | 41 | 183 | IPR036770 | - | |
| Gabi1201g00006 | 203 | SMART | ANK_2a | 103 | 132 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | SMART | ANK_2a | 143 | 172 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | SMART | ANK_2a | 70 | 99 | IPR002110 | GO:0005515 | |
| Gabi1201g00006 | 203 | Gene3D | - | 105 | 197 | IPR036770 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi1201g00006 | 10 | 186 | Ion Channels | AT2G25600 | 31.553 | 1.81e-14 | 69.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1201g00006 | - | - | gmx:100527544 | 326.25 |